Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq108 95.1 1e-14 seq560 87.8 2e-12 >seq108 Length=252163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || || ||||| || || ||||| ||||||||||| ||||| Sbjct 247257 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 247316 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | |||| ||| || | | ||||| |||| |||| |||||| |||| Sbjct 247317 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 247376 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||||||||| Sbjct 247377 TCAACGTTTTCACGAAAATCTGCAT 247401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 |||||||||||||| || || ||||| || |||||||| |||||| ||| | | | Sbjct 245321 ATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTC 245380 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| ||| |||| | |||||| |||| || | |||||| || || | || || ||| Sbjct 245381 TCAATCGTATCGGACGCCTCCACCTCGAGTGTAATGGTTTTACCCGTTAACGTCTTCACG 245440 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 245441 AAAATTTGCAT 245451 >seq560 Length=97729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||| || ||||| ||||||||||||||||| ||||| | Sbjct 87499 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 87558 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| |||| || | || | |||||| || || | || | |||||||| || || Sbjct 87559 TTGACATGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAGC 87618 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| ||||| || |||||| Sbjct 87619 GTTTTGACGAAGATTTGCATG 87639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483229184080400