Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1178 122 1e-21 seq1222 105 1e-16 seq2700 93.3 6e-13 seq2579 93.3 6e-13 seq346 93.3 6e-13 >seq1178 Length=58056 Score = 122 bits (134), Expect = 1e-21 Identities = 177/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| | | |||| ||||||||||||||||| || |||| | | Sbjct 22031 TCGTACTCGGTATATGTCTATCGTGTGCTCAAGCAGGTGCATCCGGATACCG---GCATA 22087 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 ||||| || || | |||||||||||||| |||||||| |||||| | |||| || ||| Sbjct 22088 TCCTCGAA--AG-CGATGTCGATCATGAATTCGTTTGTGAACGACGTTTTCGAACGTATC 22144 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| |||| || |||| | |||||||||| || ||| | || || Sbjct 22145 GCAGCTGAGGCAAGTCGTCTAGCGCATTACAACAAGCGCTCAACTATCTCTTCTCGTGAA 22204 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| || ||||| || || ||| | | || ||||| |||| ||| || || |||||| Sbjct 22205 ATCCAAACTGCCGTTCGTCTCATCCTTCCAGGAGAACTCGCCAAGCATGCGGTATCCGAG 22264 Query 725136 GGCACCA 725142 || |||| Sbjct 22265 GGAACCA 22271 >seq1222 Length=56352 Score = 105 bits (116), Expect = 1e-16 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||||||||||||||| || |||| | |||||| || || | ||||||||| Sbjct 46971 GTGCTCAAGCAGGTGCATCCGGATACCG---GCATATCCTCGAA--AG-CGATGTCGATC 47024 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| ||||| || |||||| | |||| || |||| |||||| | ||| | || Sbjct 47025 ATGAATTCGTTCGTGAACGACGTTTTCGAGCGTATCGCTGTCGAGGCAAGCCGCATAGCA 47084 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | | |||||| ||| |||||| | || || |||||||| ||||| || || ||| Sbjct 47085 CATTACAACAAACGCTCGACGATCTCTTCCCGTGAAATCCAGACTGCCGTTCGTCTCATC 47144 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || || || |||| ||| || || |||||||| |||| Sbjct 47145 CTTCCGGGAGAGCTCGCCAAGCATGCGGTATCCGAGGGAACCA 47187 >seq2700 Length=27275 Score = 93.3 bits (102), Expect = 6e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||| | ||||||||||| ||| || || || ||| || || | | ||||||||| Sbjct 9008 GTGTTGAAGCAGGTGCATCCC-GACACG--GGAATATCTTCGAA---GGCAATGTCGATC 8955 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || ||||| |||||| | |||| || || | | || || ||||||| || Sbjct 8954 ATGAATTCATTTGTGAACGACGTCTTCGAACGGATTGCTGCTGAAGCGAGTCGCCTTGCC 8895 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||| || |||||| | || || |||||||| || || || || ||| Sbjct 8894 CACTACAACAAACGGTCGACGATCTCATCTCGTGAAATCCAGACTGCGGTTCGTCTTATC 8835 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || ||||| | ||| || || || |||||||| Sbjct 8834 CTGCCTGGAGAGCTGGCTAAGCATGCAGTATCTGAGGGCAC 8794 >seq2579 Length=28830 Score = 93.3 bits (102), Expect = 6e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||| | ||||||||||| ||| || || || ||| || || | | ||||||||| Sbjct 26295 GTGTTGAAGCAGGTGCATCCC-GATACG--GGAATATCTTCGAA---GGCAATGTCGATC 26348 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || ||||| |||||| | |||| || || | | || || ||||||| || Sbjct 26349 ATGAATTCATTTGTGAACGACGTCTTCGAACGGATTGCTGCTGAAGCGAGTCGCCTTGCC 26408 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||| || |||||| | || || |||||||| || || || || ||| Sbjct 26409 CACTACAACAAACGGTCGACGATCTCATCTCGTGAAATCCAGACTGCGGTTCGTCTTATC 26468 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || ||||| | ||| || || || |||||||| Sbjct 26469 CTGCCTGGAGAGCTGGCTAAGCATGCAGTATCTGAGGGCAC 26509 >seq346 Length=135079 Score = 93.3 bits (102), Expect = 6e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||||||||||||||| || |||| | |||||| || | | ||||| || Sbjct 43196 GTGCTCAAGCAGGTGCATCCTGACACCG---GCATATCCTCGAA---GGCGATGTCAATA 43249 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| ||||| || |||||| | |||| ||||||| | | || || |||| || ||| Sbjct 43250 ATGAATTCGTTCGTGAACGACGTTTTCGAGCGCATCGCCGCTGAAGCAAGTCGTCTAGCG 43309 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | | ||| || ||| ||||| | || ||||||||||| || || || || || Sbjct 43310 CAGTACAATAAACGCTCAACGATTTCTTCTCGTGAGATCCAGACTGCGGTTCGTCTCATT 43369 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || || |||| ||| || || || ||||| || Sbjct 43370 CTGCCAGGAGAGCTCGCCAAGCATGCGGTATCGGAGGGGAC 43410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174752712217020