Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1178 122 1e-21
seq1222 105 1e-16
seq2700 93.3 6e-13
seq2579 93.3 6e-13
seq346 93.3 6e-13
>seq1178
Length=58056
Score = 122 bits (134), Expect = 1e-21
Identities = 177/247 (72%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955
||||||||| | | |||| ||||||||||||||||| || |||| | |
Sbjct 22031 TCGTACTCGGTATATGTCTATCGTGTGCTCAAGCAGGTGCATCCGGATACCG---GCATA 22087
Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015
||||| || || | |||||||||||||| |||||||| |||||| | |||| || |||
Sbjct 22088 TCCTCGAA--AG-CGATGTCGATCATGAATTCGTTTGTGAACGACGTTTTCGAACGTATC 22144
Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075
| | ||||| |||| || |||| | |||||||||| || ||| | || ||
Sbjct 22145 GCAGCTGAGGCAAGTCGTCTAGCGCATTACAACAAGCGCTCAACTATCTCTTCTCGTGAA 22204
Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135
||||| || ||||| || || ||| | | || ||||| |||| ||| || || ||||||
Sbjct 22205 ATCCAAACTGCCGTTCGTCTCATCCTTCCAGGAGAACTCGCCAAGCATGCGGTATCCGAG 22264
Query 725136 GGCACCA 725142
|| ||||
Sbjct 22265 GGAACCA 22271
>seq1222
Length=56352
Score = 105 bits (116), Expect = 1e-16
Identities = 159/223 (71%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
||||||||||||||||| || |||| | |||||| || || | |||||||||
Sbjct 46971 GTGCTCAAGCAGGTGCATCCGGATACCG---GCATATCCTCGAA--AG-CGATGTCGATC 47024
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
||||| ||||| || |||||| | |||| || |||| |||||| | ||| | ||
Sbjct 47025 ATGAATTCGTTCGTGAACGACGTTTTCGAGCGTATCGCTGTCGAGGCAAGCCGCATAGCA 47084
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| | |||||| ||| |||||| | || || |||||||| ||||| || || |||
Sbjct 47085 CATTACAACAAACGCTCGACGATCTCTTCCCGTGAAATCCAGACTGCCGTTCGTCTCATC 47144
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| | || || || |||| ||| || || |||||||| ||||
Sbjct 47145 CTTCCGGGAGAGCTCGCCAAGCATGCGGTATCCGAGGGAACCA 47187
>seq2700
Length=27275
Score = 93.3 bits (102), Expect = 6e-13
Identities = 155/221 (70%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
||| | ||||||||||| ||| || || || ||| || || | | |||||||||
Sbjct 9008 GTGTTGAAGCAGGTGCATCCC-GACACG--GGAATATCTTCGAA---GGCAATGTCGATC 8955
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
||||| || ||||| |||||| | |||| || || | | || || ||||||| ||
Sbjct 8954 ATGAATTCATTTGTGAACGACGTCTTCGAACGGATTGCTGCTGAAGCGAGTCGCCTTGCC 8895
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| || |||||| || |||||| | || || |||||||| || || || || |||
Sbjct 8894 CACTACAACAAACGGTCGACGATCTCATCTCGTGAAATCCAGACTGCGGTTCGTCTTATC 8835
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||| || || ||||| | ||| || || || ||||||||
Sbjct 8834 CTGCCTGGAGAGCTGGCTAAGCATGCAGTATCTGAGGGCAC 8794
>seq2579
Length=28830
Score = 93.3 bits (102), Expect = 6e-13
Identities = 155/221 (70%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
||| | ||||||||||| ||| || || || ||| || || | | |||||||||
Sbjct 26295 GTGTTGAAGCAGGTGCATCCC-GATACG--GGAATATCTTCGAA---GGCAATGTCGATC 26348
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
||||| || ||||| |||||| | |||| || || | | || || ||||||| ||
Sbjct 26349 ATGAATTCATTTGTGAACGACGTCTTCGAACGGATTGCTGCTGAAGCGAGTCGCCTTGCC 26408
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| || |||||| || |||||| | || || |||||||| || || || || |||
Sbjct 26409 CACTACAACAAACGGTCGACGATCTCATCTCGTGAAATCCAGACTGCGGTTCGTCTTATC 26468
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||| || || ||||| | ||| || || || ||||||||
Sbjct 26469 CTGCCTGGAGAGCTGGCTAAGCATGCAGTATCTGAGGGCAC 26509
>seq346
Length=135079
Score = 93.3 bits (102), Expect = 6e-13
Identities = 154/221 (70%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
||||||||||||||||| || |||| | |||||| || | | ||||| ||
Sbjct 43196 GTGCTCAAGCAGGTGCATCCTGACACCG---GCATATCCTCGAA---GGCGATGTCAATA 43249
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
||||| ||||| || |||||| | |||| ||||||| | | || || |||| || |||
Sbjct 43250 ATGAATTCGTTCGTGAACGACGTTTTCGAGCGCATCGCCGCTGAAGCAAGTCGTCTAGCG 43309
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| | ||| || ||| ||||| | || ||||||||||| || || || || ||
Sbjct 43310 CAGTACAATAAACGCTCAACGATTTCTTCTCGTGAGATCCAGACTGCGGTTCGTCTCATT 43369
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||| || || || |||| ||| || || || ||||| ||
Sbjct 43370 CTGCCAGGAGAGCTCGCCAAGCATGCGGTATCGGAGGGGAC 43410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7174752712217020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |