Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq108 134 1e-26
>seq108
Length=252163
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||||||||| || ||||| ||||| || ||||| |||||
Sbjct 244252 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 244311
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| || || |||||||| ||||| || | ||||||||||||||||||
Sbjct 244312 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 244371
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || |||||||| || ||| || || | || ||||||| |||||
Sbjct 244372 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACC 244431
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | |||||| || || || || | || || ||||||||||||||
Sbjct 244432 TCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 244478
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || || || || | ||| |||||||| || || || ||||| || || || || ||
Sbjct 247259 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 247318
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|||||| || | || || |||| |||||| |||||||| ||||||||||||||
Sbjct 247319 GCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGGTC 247378
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| |||||||| |||||
Sbjct 247379 AACGTTTTCACGAAAATCTGCAT 247401
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 134589 CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT 134648
||||||||||| || ||||| |||||||| || || |||||| ||||| || |
Sbjct 244909 CGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCCTTGACGTTTTCGATA 244968
Query 134649 GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATT 134708
||||| |||| |||||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 244969 GTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCAACGTTTTCACGAAGATC 245028
Query 134709 TGCAT 134713
|||||
Sbjct 245029 TGCAT 245033
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| || | ||||||||||| || || || || || || ||||| || ||
Sbjct 245312 CCAGCAAAGATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCC 245371
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || ||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 245372 TTCACATTCTCAATCGTATCGGACGCCTCCACCTCGAGTGTAATGGTTTTACCCGTTAAC 245431
Query 134694 GTTTTAACGAAAATTTGCAT 134713
|| || ||||||||||||||
Sbjct 245432 GTCTTCACGAAAATTTGCAT 245451
Score = 82.4 bits (90), Expect = 8e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || ||||| || | ||||| ||||| || || ||||| ||||| || ||||| ||
Sbjct 246226 TTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTTC 246285
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || || | ||| ||||| | ||| || ||||| || ||||||||||||||
Sbjct 246286 GCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGTG 246345
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| || |||||
Sbjct 246346 AGGGTCTTGACGAAGATCTGCAT 246368
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 134589 CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT 134648
||||||||||| || || || ||||| || ||||| || || ||||| || | |
Sbjct 246742 CGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATT 246801
Query 134649 GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATT 134708
||||| |||| |||||| || ||||| || ||||| || || || || || || || |||
Sbjct 246802 GTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAATGTCTTCACAAATATT 246861
Query 134709 TGCAT 134713
|||||
Sbjct 246862 TGCAT 246866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505198072709200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |