Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq108 161 1e-34 seq51 129 7e-25 seq560 120 3e-22 seq1742 98.7 1e-15 >seq108 Length=252163 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||||| || |||||||| |||||| | ||||| ||| | Sbjct 244478 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 244419 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||| || || ||||| || |||||||| || || || || ||| Sbjct 244418 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 244359 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || || ||||| ||||| | || ||||| | |||||||| Sbjct 244358 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 244299 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || | ||||||||||| || Sbjct 244298 ATCCAGAAGGAGTCCACTCTCCACCTCGTGCTTCGTCTTCGCGGAGG 244252 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| || || || || || || || || || Sbjct 246368 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCC 246309 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| ||||||| || ||||||||||| ||||| || ||||| || || Sbjct 246308 GATACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAA 246249 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || |||||||||||| Sbjct 246248 CAGCGACTCATCTTTGCTGGTAAG 246225 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||| | || || || || ||||| || ||||| ||| | Sbjct 245451 ATGCAAATTTTCGTGAAGACGTTAACGGGTAAAACCATTACACTCGAGGTGGAGGCGTCC 245392 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| |||||||||| || || ||||||||||| || || || || ||| Sbjct 245391 GATACGATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAG 245332 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||||||| Sbjct 245331 CAGCGGCTCATCTTTGCTGGT 245311 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || ||| | ||||| || || || ||||| ||||| || | Sbjct 247401 ATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTCG 247342 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 247341 GATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 247282 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 || ||||| || || || ||||||| Sbjct 247281 CAACGTCTTATCTTCGCCGGTAAGC 247257 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/150 (74%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 27400 ACTATAA---TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||||| |||||||||| || || || ||||| |||||||| || ||||| || || Sbjct 248273 ACTATAAGCATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTG 248214 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| | |||| |||| || | ||||| || || |||||||| ||||| || || Sbjct 248213 GAGGCGTCAGATACAATTGAGAACGTCAAGGCCAAGATACAGGACAAAGAGGGCATCCCG 248154 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| || ||||| || || || ||| Sbjct 248153 CCTGACCAACAACGTCTCATCTTCGCCGGT 248124 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || ||| | ||||||||||| || || || || || || | | Sbjct 245033 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACGCTCGAAGTGGAAGCGTCT 244974 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| ||||| ||||| || || || || ||||| || ||| Sbjct 244973 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 244914 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| ||||| || ||||||| Sbjct 244913 CAGCGCCTAATCTTCGCTGGTA 244892 >seq51 Length=344957 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||| || || ||||| ||||| || || || || || ||| | Sbjct 218271 ATGCAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCTTCG 218212 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| || |||||||||||||||||||||||||| |||||| Sbjct 218211 GATACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCAG 218152 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| || || || ||| || Sbjct 218151 CAGCGTCTGATCTTCGCCGGTCAG 218128 >seq560 Length=97729 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||||| ||||||||||| ||||| || || || |||||| Sbjct 79796 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 79737 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| ||||| ||||||||||| || || | ||| ||||| Sbjct 79736 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 79677 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| || || || ||| Sbjct 79676 CAGCGTCTGATCTTCGCAGGT 79656 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||||||||||||||||| ||||| || || || |||||| Sbjct 88443 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 88384 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| ||||| || |||||||| || || || || ||||| Sbjct 88383 GACACAATCGAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGTATCCCACCCGACCAA 88324 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| || || || ||| Sbjct 88323 CAGCGTCTGATCTTCGCAGGT 88303 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||||| || || ||||| || || |||||||| ||| | Sbjct 88943 ATGCAGCTCTTTGTCAAGACGCTAACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTCC 88884 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || | || ||||||||||||||||| || || || |||||| Sbjct 88883 GACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 88824 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || ||||| ||| || Sbjct 88823 CAACGTCTCATCTTTGCCGGTTAG 88800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||| ||| |||||||| || ||||||||||| ||| | Sbjct 80368 ATGCAGATTTTTGTCAAGACGATTAGTGGCAAGACGATCACTCTTGAGGTCGAGCCTTCC 80309 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||| ||||| || || || || Sbjct 80308 GACACCATCGAGAACGTCAAGACGAAGATTCAGGACAAAGAGGGTATCCCACCCATTGAG 80249 Query 27526 CAGCGTCTAAT 27536 |||||||| || Sbjct 80248 CAGCGTCTCAT 80238 >seq1742 Length=41667 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || || || || || |||||||| || | Sbjct 22873 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTTG 22932 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| |||||||||||||| ||||| ||||| || |||||| Sbjct 22933 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 22992 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || || || ||| || Sbjct 22993 CAACGTCTTATATTCGCCGGTTAG 23016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || || || || || |||||||| || | Sbjct 31432 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31373 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| |||||||||||||| ||||| ||||| || |||||| Sbjct 31372 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31313 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || || || ||| || Sbjct 31312 CAACGTCTTATATTCGCCGGTTAG 31289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || || || || || |||||||| || | Sbjct 31736 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31677 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| |||||||||||||| ||||| ||||| || |||||| Sbjct 31676 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31617 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || || || ||| || Sbjct 31616 CAACGTCTTATATTCGCCGGTTAG 31593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570084343215200