Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq108 129 1e-24
seq560 118 2e-21
seq1742 104 5e-17
seq51 87.8 4e-12
>seq108
Length=252163
Score = 129 bits (142), Expect = 1e-24
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || ||||| ||||||||||| || ||||||||||| |||| |||||
Sbjct 244258 CGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTT 244317
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || ||||| || ||||| || ||||| || || || || || || || | ||
Sbjct 244318 CGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCC 244377
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||| || || ||||| |||||| || ||||| || || || || ||||| | |
Sbjct 244378 TCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAA 244437
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || || ||||| || || | |||||
Sbjct 244438 GTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 244478
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029
|||| || ||||||||||| ||||| || || || || | ||||||||||||||||||||
Sbjct 247257 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 247316
Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089
| ||| || ||||| || || || || ||| |||||||||||||| || || || |
Sbjct 247317 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 247376
Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114
| | || || || || | ||||||
Sbjct 247377 TCAACGTTTTCACGAAAATCTGCAT 247401
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| ||||| || || |||||||| | ||||| || |||||||| |||
Sbjct 244894 CCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCC 244953
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||||||||| |||||||| ||| || ||||| ||||| ||||| || || |
Sbjct 244954 TTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCAAC 245013
Query 211095 GTCTTTACAAACACCTGCAT 211114
|| || || || | ||||||
Sbjct 245014 GTTTTCACGAAGATCTGCAT 245033
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||||||||| || || || || |||| ||||||||||| ||||||||
Sbjct 246727 CCAGCGAAGATAAGGCGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCC 246786
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||| ||||| ||||| || ||| ||||| |||||||| || || || || |
Sbjct 246787 TTGACGTTCTCGATTGTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAAT 246846
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | |||||
Sbjct 246847 GTCTTCACAAATATTTGCAT 246866
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| || |||||||||||||| || | || || |||||||| |||||
Sbjct 248125 CCGGCGAAGATGAGACGTTGTTGGTCAGGCGGGATGCCCTCTTTGTCCTGTATCTTGGCC 248184
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||| || || || || || || || ||||||||||||||||| || || |||
Sbjct 248185 TTGACGTTCTCAATTGTATCTGACGCCTCCACTTCGAGAGTGATCGTCTTGCCAGTAAGA 248244
Query 211095 GTCTTTACAAACACCTGCAT 211114
|| || || || | |||||
Sbjct 248245 GTTTTCACGAAGATTTGCAT 248264
Score = 91.5 bits (100), Expect = 3e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||||||||||||||| ||||| ||||||||||||||||| | ||| ||
Sbjct 245040 ACGAAGGCGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCGGAAAGCGT 245099
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCT 210977
| |||||| || ||||| || |||
Sbjct 245100 GCGTCCATCCTCAAGCTGTTTACCT 245124
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| || ||||| | |||||||| || || |||| || ||||| |||||||||||
Sbjct 245843 CCAGCAAAGATTAAACGTTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATCTTCGCC 245902
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||| ||||| ||||| || || ||||| || || || ||||| || || | |
Sbjct 245903 TTAACGTTCTCGATCGTGTCGGATGCCTCGACCTCCAGGGTAATGGTCTTGCCTGTTAAA 245962
Query 211095 GTCTTTACAAACACCTGCAT 211114
|| || ||||| | ||||||
Sbjct 245963 GTTTTCACAAAGATCTGCAT 245982
>seq560
Length=97729
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| || ||||| || ||||| ||||| || || | || ||||||||||| ||||| |
Sbjct 88804 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 88863
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||||||||||||||| || || ||||| || ||||||||||| ||||| ||
Sbjct 88864 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGTTAGC 88923
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | ||||||
Sbjct 88924 GTCTTGACAAAGAGCTGCAT 88943
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
||||||||||| || || |||||||| ||| | | ||||||||||||||||| ||
Sbjct 79657 CCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGCC 79716
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || |||||||| ||||| || || || ||||| || |||||||| || || ||
Sbjct 79717 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAGC 79776
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | ||||||
Sbjct 79777 GTCTTGACAAATATCTGCAT 79796
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
||||||||||| || || |||||||| || || | ||||||||||| ||||| ||
Sbjct 88304 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGCC 88363
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || |||||||| ||||| || || || ||||| || |||||||| || || ||
Sbjct 88364 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAGC 88423
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | ||||||
Sbjct 88424 GTCTTGACAAATATCTGCAT 88443
>seq1742
Length=41667
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||| ||||| ||||| ||||| || |||| || || |||||||| || ||
Sbjct 31293 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 31352
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || ||||| ||||| || ||| ||||| || |||||||| ||||| ||||||
Sbjct 31353 TTTACATTCTCGATCGTGTCCGACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 31412
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | |||||
Sbjct 31413 GTCTTCACAAAAATTTGCAT 31432
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||| ||||| ||||| ||||| || |||| || || |||||||| || ||
Sbjct 31597 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 31656
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || ||||| ||||| || ||| ||||| || |||||||| ||||| ||||||
Sbjct 31657 TTTACATTCTCGATCGTGTCCGACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 31716
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | |||||
Sbjct 31717 GTCTTCACAAAAATTTGCAT 31736
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||| ||||| ||||| ||||| || |||| || || |||||||| || ||
Sbjct 23012 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 22953
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || ||||| ||||| | ||| ||||| || |||||||| ||||| ||||||
Sbjct 22952 TTTACATTCTCGATCGTGTCCAACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 22893
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | |||||
Sbjct 22892 GTCTTCACAAAAATTTGCAT 22873
>seq51
Length=344957
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| || || || ||||| ||||||| ||| ||||||||||| ||||||
Sbjct 218132 CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCC 218191
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| ||||| || || || || || || ||||| || || ||||| || || ||
Sbjct 218192 TTCACATTTTCAATAGTATCCGAAGCCTCGACTTCGAGTGTTATTGTCTTACCGGTTAGG 218251
Query 211095 GTCTTTACAAACACCTGCATTTT 211117
|| || | || | ||||| ||
Sbjct 218252 GTTTTGATGAAGATTTGCATCTT 218274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158681054654150
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