Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq108 129 1e-24
seq483 109 1e-18
seq560 102 2e-16
>seq108
Length=252163
Score = 129 bits (142), Expect = 1e-24
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || |||||||||||||| || || |||| || || || | || |||
Sbjct 244258 CGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTT 244317
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || || || || || || ||||| ||||| || || |||||||| |||||
Sbjct 244318 CGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCC 244377
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||| ||||| ||||| |||||| ||||| || || || | ||||| || ||
Sbjct 244378 TCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAA 244437
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||| |||| || || | ||| | ||||||
Sbjct 244438 GTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 244478
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|||||||||||||| || || || || || ||||| |||||||||||||||||||| |
Sbjct 246727 CCAGCGAAGATAAGGCGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCC 246786
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| || ||||| ||||| || | |||||| || | ||||| || ||||| |||||
Sbjct 246787 TTGACGTTCTCGATTGTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAAT 246846
Query 225694 GTTTTTATGAACACTTGCAT 225713
|| || | || | ||||||
Sbjct 246847 GTCTTCACAAATATTTGCAT 246866
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||||||||| || || || || || || || || ||||| || || ||||| ||| |
Sbjct 244894 CCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCC 244953
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| || |||||| ||||| || | |||||| || | |||||| |||||||| |||||
Sbjct 244954 TTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCAAC 245013
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | ||| | |||||
Sbjct 245014 GTTTTCACGAAGATCTGCAT 245033
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628
|||| || ||||||||||| ||||| || || || || || ||||||||||| |||||||
Sbjct 247257 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 247316
Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688
| || ||| ||| || || || || | |||||| || | ||||| || || || |
Sbjct 247317 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 247376
Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713
|||| ||||| | ||| | |||||
Sbjct 247377 TCAACGTTTTCACGAAAATCTGCAT 247401
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| |||||||| || ||||||||||| ||||| || || || ||||| || ||||| |
Sbjct 248125 CCGGCGAAGATGAGACGTTGTTGGTCAGGCGGGATGCCCTCTTTGTCCTGTATCTTGGCC 248184
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| || || || || ||||| | ||||| || | |||||||||||||| || | |
Sbjct 248185 TTGACGTTCTCAATTGTATCTGACGCCTCCACTTCGAGAGTGATCGTCTTGCCAGTAAGA 248244
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | ||| | ||||||
Sbjct 248245 GTTTTCACGAAGATTTGCAT 248264
>seq483
Length=109784
Score = 109 bits (120), Expect = 1e-18
Identities = 187/269 (70%), Gaps = 7/269 (3%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| || ||||| | |||||| | |||||||| | ||||||| || ||| || |
Sbjct 5643 ACTTTGTATTTTTTGTTTGGTTTGTGGTCTGGTATGGTTGGTACTAGGTTGTCTTTGGTG 5584
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560
|| | || ||||| ||| || ||| || | ||| |||| | | || | ||
Sbjct 5583 ATTCGTTTGGAATTGGCTAAACCTGGTCTTC---TTTTG---GGTAGTGGTCAGTTATAT 5530
Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620
|| | ||||||| |||||||| || | |||||||| ||| | ||||| || ||||
Sbjct 5529 AATTCTGTTATTACTGCGCATGCTATTTTGATGATTTT-TTTATGGTTATACCTACTATG 5471
Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680
|| || ||||| || |||||| | | ||||| ||| | || |||||||||||| ||||
Sbjct 5470 ATTGGTGGTTTTGGTAATTGAATGTTGCCTTTGATGTTGGGGGCTCCTGATATGAGTTTT 5411
Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATT 7709
|| | | || ||| |||||||||| ||
Sbjct 5410 CCTCGTTTAAATAATTTAAGTTTTTGGTT 5382
>seq560
Length=97729
Score = 102 bits (112), Expect = 2e-16
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| |||||||| || || ||||||||||| || |||||||||||||||||||| || |
Sbjct 88304 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGCC 88363
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||| |||||| ||||| || | ||||| || | || ||||||||||| ||
Sbjct 88364 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGT 88419
Score = 93.3 bits (102), Expect = 1e-13
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| |||||||| || || ||||||||||| | |||||||||||||| ||||| || |
Sbjct 79657 CCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGCC 79716
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||| |||||| ||||| || | ||||| || | || ||||||||||| ||
Sbjct 79717 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGT 79772
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| || ||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct 88804 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 88863
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| || |||||||||||| || | || || || | ||||||||||| |||||
Sbjct 88864 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGT 88919
Score = 86.0 bits (94), Expect = 1e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| ||||| || ||||| ||||| |||||||| || |||||||||||||| ||||| |
Sbjct 87499 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 87558
Query 225634 TTCACA-GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692
|| ||| ||| | | | || |||| || || || ||||| | ||| ||||| || |
Sbjct 87559 TTGACATGCTGC-ACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAG 87617
Query 225693 AGTTTTTATGAACACTTGCAT 225713
||||| | ||| | ||||||
Sbjct 87618 CGTTTTGACGAAGATTTGCAT 87638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192046693206740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |