Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq108 114 9e-21 seq560 82.4 5e-11 >seq108 Length=252163 Score = 114 bits (126), Expect = 9e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| |||||||| || || | || || |||| || Sbjct 244269 CACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTC 244328 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| || || || |||||||| | ||||||||||| | || | ||| ||||| || Sbjct 244329 CAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTATCTTG 244388 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | ||| | || || |||| | |||||||||| ||||| |||| Sbjct 244389 AATCTT-GGCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCT 244447 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || ||||||||||| ||||||||| Sbjct 244448 TGCCTGTCAGCGTCTTCACGAAAATTTGCATG 244479 >seq560 Length=97729 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||| | ||| ||||| || | || | ||| ||||| ||| |||||| | Sbjct 88804 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTC-AC 88862 Query 44258 TTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || || | || | |||||||||| | || ||||| | || |||||||| ||||| || Sbjct 88863 TTTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGTTAG 88922 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 ||||| || |||| |||||| Sbjct 88923 CGTCTTGACAAAGAGCTGCATG 88944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359851276085070