Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1742 149 2e-30 seq108 131 4e-25 seq560 111 4e-19 seq51 95.1 3e-14 >seq1742 Length=41667 Score = 149 bits (164), Expect = 2e-30 Identities = 115/137 (84%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| |||||||||||||||||||||||||| ||||||||| || ||| Sbjct 31429 CAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCGGAC 31370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || |||||||||||||| || || || || ||||||||| Sbjct 31369 ACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAGCAA 31310 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| |||||||| Sbjct 31309 CGTCTTATATTCGCCGG 31293 Score = 149 bits (164), Expect = 2e-30 Identities = 115/137 (84%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| |||||||||||||||||||||||||| ||||||||| || ||| Sbjct 31733 CAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCGGAC 31674 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || |||||||||||||| || || || || ||||||||| Sbjct 31673 ACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAGCAA 31614 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| |||||||| Sbjct 31613 CGTCTTATATTCGCCGG 31597 Score = 143 bits (158), Expect = 6e-29 Identities = 114/137 (83%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| |||||||||||||||||||||||||| ||||||||| | ||| Sbjct 22876 CAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTTGGAC 22935 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || |||||||||||||| || || || || ||||||||| Sbjct 22936 ACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAGCAA 22995 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| |||||||| Sbjct 22996 CGTCTTATATTCGCCGG 23012 >seq108 Length=252163 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || || ||||| ||||| |||||||||||| || || Sbjct 247398 CAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTCGGAT 247339 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct 247338 ACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAA 247279 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||||||||| || Sbjct 247278 CGTCTTATCTTCGCCGGTAA 247259 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||||| || || || |||||||| ||||| ||||| ||||| Sbjct 248261 CAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTGGAGGCGTCAGAT 248202 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 248201 ACAATTGAGAACGTCAAGGCCAAGATACAGGACAAAGAGGGCATCCCGCCTGACCAACAA 248142 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 248141 CGTCTCATCTTCGCCGG 248125 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || ||||| || || || || | |||||||| || || Sbjct 244475 CAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCCGAT 244416 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| |||||||| || || || || || || || || ||||| Sbjct 244415 ACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAGCAG 244356 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || ||||| || || || || | || || | || |||||| || Sbjct 244355 CGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAACATC 244296 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 244295 CAGAAGGAGTCCACTCTCCACCTCGT 244270 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || || || ||||| ||||| |||||| || ||| Sbjct 245030 CAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACGCTCGAAGTGGAAGCGTCTGAC 244971 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||| || ||||| |||||||| || ||||| || ||||| Sbjct 244970 ACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAGCAG 244911 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 244910 CGCCTAATCTTCGCTGG 244894 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || ||||| ||||| || ||||||||| || ||| Sbjct 246863 CAAATATTTGTGAAGACATTGACTGGCAAAACTATCACTCTGGAGGTGGAAGCGTCGGAC 246804 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||| || || || || ||||| Sbjct 246803 ACAATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAG 246744 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 246743 CGCCTTATCTTCGCTGG 246727 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| ||||| ||||| || ||| || || Sbjct 246365 CAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCCGAT 246306 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||||||||| || ||||||||||| || || Sbjct 246305 ACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAACAG 246246 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||| ||||| || || || Sbjct 246245 CGACTCATCTTTGCTGGTAA 246226 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || || ||||| || || ||||||||||| || || Sbjct 245448 CAAATTTTCGTGAAGACGTTAACGGGTAAAACCATTACACTCGAGGTGGAGGCGTCCGAT 245389 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| || ||||| || || ||||| || || ||||| Sbjct 245388 ACGATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAG 245329 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 245328 CGGCTCATCTTTGCTGG 245312 >seq560 Length=97729 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 || || || || || || || || ||||||||||| ||||| || || ||||||||| Sbjct 88934 TTTGTCAAGACGCTAACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTCCGACACCATC 88875 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || ||||| ||| |||||||||||||| || || ||||| || ||||||||||| || Sbjct 88874 GAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAACGTCTC 88815 Query 178050 ATCTTCGCCGG 178060 ||||| ||||| Sbjct 88814 ATCTTTGCCGG 88804 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 ||| | | || ||||| || || || | | || || |||||||| || ||||| || Sbjct 80373 AAACGATGCAGATTTTTGTCAAGACGATTAGTGGCAAGACGATCACTCTTGAGGTCGAGC 80314 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 || |||||||||||||||||||| ||||||||||||||||| || ||||| || Sbjct 80313 CTTCCGACACCATCGAGAACGTCAAGACGAAGATTCAGGACAAAGAGGGTATCCCACCCA 80254 Query 178036 ACCAGCAACGACTTATCTTCGCCGG 178060 |||| || || |||| ||| || Sbjct 80253 TTGAGCAGCGTCTCATCTACGCAGG 80229 >seq51 Length=344957 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||| | ||||| || || || || || || || ||||| || || || || Sbjct 218268 CAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCTTCGGAT 218209 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||||||| || ||||| ||||| |||||||| Sbjct 218208 ACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCAGCAG 218149 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 218148 CGTCTGATCTTCGCCGG 218132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203242142821740