Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq108 129 5e-25
seq560 84.2 2e-11
>seq108
Length=252163
Score = 129 bits (142), Expect = 5e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||| || || || ||| ||||||||| ||||||||||| ||
Sbjct 244251 GCCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 244310
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || |||| || || || ||||| || || || || ||||| || || | ||
Sbjct 244311 CAGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGG 244370
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||| | | ||| | || || |||| | | ||| ||| || |||||
Sbjct 244371 TATACCCTCCTTAT-CTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCA 244429
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||| || || || || || ||||||||||| |||||||| ||||||
Sbjct 244430 CCTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCATG 244479
Score = 82.4 bits (90), Expect = 7e-11
Identities = 79/100 (79%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || | || ||||| ||||||| ||| || |||||||||||||||||||||
Sbjct 246370 CCGCCACGCAATCGCAACACGAGATGCAACGTTGATTCTTTCTGAATGTTATAGTCGGAG 246429
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGC-GAATATC 41734
|| ||||| | || |||||||| ||||| || ||||||
Sbjct 246430 AGTGTGCGTCCATCCTCGAGCTGTTTGCCTGCAAAATATC 246469
>seq560
Length=97729
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
||||||| || | ||| | || || |||||||| ||||||||| || || |||||||
Sbjct 87010 CGCCGCCTCGCAAACGAAGAACGAGGTGCAGCGTAGACTCCTTCTGGATATTGTAGTCGG 87069
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724
|||| ||||| ||||| ||||| ||||||||
Sbjct 87070 AGAGAGTGCGGTCGTCCTCGAGTTGCTTGCC 87100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462120754252000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |