Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq108 129 5e-25 seq560 84.2 2e-11 >seq108 Length=252163 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || ||| ||||||||| ||||||||||| || Sbjct 244251 GCCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 244310 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || || || ||||| || || || || ||||| || || | || Sbjct 244311 CAGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGG 244370 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||| | | ||| | || || |||| | | ||| ||| || ||||| Sbjct 244371 TATACCCTCCTTAT-CTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCA 244429 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || ||||||||||| |||||||| |||||| Sbjct 244430 CCTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCATG 244479 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || | || ||||| ||||||| ||| || ||||||||||||||||||||| Sbjct 246370 CCGCCACGCAATCGCAACACGAGATGCAACGTTGATTCTTTCTGAATGTTATAGTCGGAG 246429 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGC-GAATATC 41734 || ||||| | || |||||||| ||||| || |||||| Sbjct 246430 AGTGTGCGTCCATCCTCGAGCTGTTTGCCTGCAAAATATC 246469 >seq560 Length=97729 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||| || | ||| | || || |||||||| ||||||||| || || ||||||| Sbjct 87010 CGCCGCCTCGCAAACGAAGAACGAGGTGCAGCGTAGACTCCTTCTGGATATTGTAGTCGG 87069 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724 |||| ||||| ||||| ||||| |||||||| Sbjct 87070 AGAGAGTGCGGTCGTCCTCGAGTTGCTTGCC 87100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462120754252000