Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq293 113 5e-20 seq116 87.8 2e-12 >seq293 Length=269193 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || ||||| || || || | || || || || || Sbjct 94179 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 94120 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | || | || |||| || || ||||| || || | || ||| Sbjct 94119 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 94060 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||||||||||| ||||| |||| || ||||| ||||| ||| Sbjct 94059 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 94000 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || || || ||| Sbjct 93999 ATCCAGAAGGAGTCCACTCTCCACCTCGTG 93970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||||||||| |||| || ||||| || Sbjct 96067 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCC 96008 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || |||| ||||||||||||||||| |||| || Sbjct 96007 GATACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAA 95948 Query 40810 CAACGACTCATCT 40822 || |||||||||| Sbjct 95947 CAGCGACTCATCT 95935 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||| || ||||| |||| || || || | Sbjct 97960 ATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTGGAGGCGTCA 97901 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||||||||||||||| | ||||| Sbjct 97900 GATACAATTGAGAACG-TCAAGGCCAAGATACAGGACAAAGAGGGCATCCCGCCTGACCA 97842 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||||| ||||||| ||| || Sbjct 97841 ACAACGTCTCATCTTCGCCGG 97821 >seq116 Length=522778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||||| ||||| || ||||| | ||||| || | |||||| || ||||| Sbjct 250370 GGTGGAGCGTTTCGCCCAGGAAGTACAGGTTCCTGAGGCACGTTTCTTCTATGGTTTTCA 250429 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 ||| || |||||| | |||||||| |||||||||| Sbjct 250430 AATCATGATAGAGAACATTCACTCGGAGATGTATTCGA 250467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 |||| |||||||| || || || || |||||||||||||| || || ||||||||||| | Sbjct 251813 TCTTTTTTTCGGGAAGCTTTGCGGCGATATTTTGGCTCAAAAAGCGTGGCCTCATGCCTG 251872 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | |||| |||||| ||||| || || || || |||| Sbjct 251873 GATTGACGCACAGCAATGAGCTTATTTCAAGAGATGAGG 251911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515135554162880