Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq732 96.9 4e-15 seq199 96.9 4e-15 seq738 95.1 1e-14 seq231 95.1 1e-14 seq111 95.1 1e-14 seq164 91.5 2e-13 seq293 84.2 3e-11 >seq732 Length=83922 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 35493 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 35552 Query 60126 TACTACCGAGGATTGAAT 60143 |||||||||||| || || Sbjct 35553 TACTACCGAGGACTGCAT 35570 >seq199 Length=371241 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 242949 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 242890 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 242889 TACTACCGAGGAT 242877 >seq738 Length=82017 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 7309 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 7250 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 7249 TACTACCGAGGA 7238 >seq231 Length=335268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 192289 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 192230 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 192229 TACTACCGAGGA 192218 >seq111 Length=530261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 516526 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 516585 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 516586 TACTACCGAGGA 516597 >seq164 Length=426221 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| | |||| | ||||||||||| ||||||||||||| Sbjct 248084 CTCCCCGGCCGGGAATCGAACCCGGATCTCGCACGTGACAGGCGCGGATACTCACCACTA 248025 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 248024 TACTACCGAGGACTG 248010 >seq293 Length=269193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || | ||| || || |||| || || || || || || || Sbjct 93988 CTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAA 94047 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||||||||||||| |||| ||| | | |||||| | | ||| | || | ||| | Sbjct 94048 GATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTAT-CTTGAATCTTGGCTTTCACAT 94106 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | || ||| || ||||| || | || || || ||||| || |||||||| | Sbjct 94107 TCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCA 94166 Query 43171 CAAAGATTTGCAT 43183 | || |||||||| Sbjct 94167 CGAAAATTTGCAT 94179 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || |||| ||||||||||| || |||||||| || |||||||| | Sbjct 95154 CCTCCTCTCAATCGCAGCACCAAATGCAGCGTAGATTCCTTTTGTATGTTGTAATCTGAT 95213 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATAT 43054 ||||| || |||| || ||||||||||| || ||||| Sbjct 95214 AGAGTGCGACCGTCTTCAAGCTGCTTACCTGCAAATAT 95251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571724765412640