Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq96 122 8e-23 seq700 104 2e-17 seq293 102 7e-17 seq10797 86.0 6e-12 seq139 86.0 6e-12 >seq96 Length=570248 Score = 122 bits (134), Expect = 8e-23 Identities = 119/152 (78%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 |||||| |||||| |||||||| || | |||||| || || |||||| | |||| Sbjct 6839 AACAAATCTGTTGAGCGCGATCGATGCCAAATTGCAGACTGCGACCTCGGTTGGCGACGA 6898 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| || ||||||||||| ||||| ||||||||| || |||| ||| ||| || Sbjct 6899 GTACTCAACGATTTCGGTACAAAGATTCGAACACTTTATTGTACCCACATTCTGCTGATT 6958 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCA 23156 ||| ||||||||||| | |||| ||||||||| Sbjct 6959 GCTCTTTCGATTGCATGCATCC-TGTAGAGCA 6989 Score = 82.4 bits (90), Expect = 7e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 || || || ||||| ||||| || ||||| |||| ||| || ||||| | | | | Sbjct 10542 TCAATAGCAGCATCGATGTCTTCCTTATGTATTCCGACGGCAACACGCATGAAGAGATGT 10601 Query 23867 TGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTA 23926 || || || || || | ||||||| || || | || ||||| || | | ||||| Sbjct 10602 TGTGGCCTTTCAACTGGTTCGCCGTTCATCTTCAGAAGGTATGATCGCTCGAGTGTTTTG 10661 Query 23927 AATCCAAAATA-GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || || ||||| || | || ||||||||||||||| ||||| |||||||| || Sbjct 10662 AAGCCGAAATACGTGAAAGA-AAAGTCACGATCGTGAACTATTGCCGAATTTAA 10714 >seq700 Length=91371 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| ||||| |||||||||||| | || || ||| |||| Sbjct 89533 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 89592 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| |||||| || || | || ||||||||| Sbjct 89593 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 89652 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| |||||||| || Sbjct 89653 CAACGTCTTATATTCGCCGG 89672 >seq293 Length=269193 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| ||||||||||| || || || | || || || |||| Sbjct 94180 CATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTC 94121 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | |||| | || ||| | || || ||||| || | |||||||| || Sbjct 94120 CGATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCA 94061 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || |||||||| |||| ||| || || || ||||| Sbjct 94060 GCAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAA 94001 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || ||||| || || || ||| Sbjct 94000 CATCCAGAAGGAGTCCACTCTCCACCTCGTGCTT 93967 >seq10797 Length=241 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| ||||| || |||| || || | || Sbjct 1 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 60 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| || ||| |||||||||||| | || |||||||| Sbjct 61 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 120 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || ||||| || Sbjct 121 CAGCGTCTGATCTTCGCAGG 140 >seq139 Length=456087 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| ||||| || |||| || || | || Sbjct 409785 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 409726 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| || ||| |||||||||||| | || |||||||| Sbjct 409725 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 409666 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || ||||| || Sbjct 409665 CAGCGTCTGATCTTCGCAGG 409646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| | || || ||||| || || || || ||||||||| | || || || || || Sbjct 410286 CATGCAGCTCTTTGTCAAGACGCTTACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTC 410227 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| || ||| || || ||||||||| || | ||||||||||| Sbjct 410226 CGACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCA 410167 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 ||| ||||| || || || || Sbjct 410166 GCAACGTCTCATCTTTGCCGG 410146 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| ||||| || |||| || || | || Sbjct 401180 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 401121 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| || ||| |||||||||||| | | |||||||| Sbjct 401120 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 401061 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || ||||| || Sbjct 401060 CAGCGTCTGATCTTCGCAGG 401041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445694029824960