Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq293 96.9 3e-15 >seq293 Length=269193 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 ||||||| |||| || || |||||||| |||||||| |||||||| || ||||||| Sbjct 94593 TACCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTG 94652 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 || | | ||| | ||||| | | ||||| || | || | ||||||||||||| Sbjct 94653 CCTTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCA 94712 Query 139743 ACGTTTTTACGAATATTTGCATA 139765 ||||||| ||||| || |||||| Sbjct 94713 ACGTTTTCACGAAGATCTGCATA 94735 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || |||||||| || Sbjct 93952 GCCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 94011 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || || ||||| || ||| |||| || || ||||||||||| || Sbjct 94012 CAGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGG 94071 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||| || || || || ||| | || | ||| | | || | || |||| | ||||| Sbjct 94072 TATACCCTCCTTATC-TTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCA 94130 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||| |||| ||| || ||||| |||||||| Sbjct 94131 CCTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 94179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495983464009600