Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq55 159 5e-35 seq875 149 1e-31 seq119 147 3e-31 seq836 140 5e-29 seq253 122 1e-23 seq34 98.7 2e-16 >seq55 Length=718927 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| |||||||| |||||||||||||| || || ||||| || || || ||| Sbjct 82735 CTTCGTGATAATATCCAAGGTATCACCAAGCCAGCAATTCGCCGTCTTGCCCGACGAGGT 82676 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | || || | |||| ||||||| || | || ||||| |||| Sbjct 82675 GGAGTGAAGCGTATTTCGGGTCTCATCTACGAAGAGACACGAGGCGTCCTGAAGGTCTTT 82616 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || || | |||||| || ||| |||||| || ||||| ||||||||| Sbjct 82615 CTGGAGAATGTCATTCGTGATGCAGTCACCTACTGCGAGCATGCGAAACGGAAGACTGTC 82556 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| ||||||| ||| ||||||| ||||| | | | | || || || ||| Sbjct 82555 ACTGCAATGGATGTCGTCTACGCACTGAAACGCCAAGGTAGAACGCTGTACGGCTTCGGA 82496 Query 16694 AGTTAA 16699 | ||| Sbjct 82495 GGCTAA 82490 >seq875 Length=50642 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | ||||| || |||||||| || |||||||||||||| || Sbjct 10363 GCCAAGCGGCATCGTAAAGTGCTTCGCGACAACATCCAGGGTATCACCAAGCCAGCAATT 10304 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || || |||||||| |||||| | || || | | || ||||||| Sbjct 10303 CGTCGTCTTGCACGCCGAGGTGGAGTGAAGCGTATTTCGGGCCTTATATACGAAGAGACG 10244 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| |||| || ||| ||| || | |||||| || ||| ||| Sbjct 10243 CGAGGAGTCCTGAAAGTCTTTCTGGAGAACGTGATTCGTGATGCAGTCACGTATTGTGAG 10184 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || |||||||| || | ||||| ||||||| || |||||||| || ||| Sbjct 10183 CATGCCAAGCGGAAGACTGTAACAGCGATGGACGTCGTCTACGCTTTGAAACGCCAGGGC 10124 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | || || |||||| | ||| Sbjct 10123 AGAACGCTGTACGGCTTTGGAGGCTAA 10097 >seq119 Length=515420 Score = 147 bits (162), Expect = 3e-31 Identities = 182/243 (75%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || |||||||| | | | || || ||||| |||||||| ||||| || || || | Sbjct 266257 CGCAAAACGTCATCGTA-AGGTGTTGCGTGATAATATCCAAGGTATCACTAAACCTGCGA 266315 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||| | || | ||||||||||| || ||| | || || | |||||||||| | Sbjct 266316 TTCGTCGTTTAGCCAGACGTGGTGGAGTGAAACGTATATCCGGTCTCATCTATGAAGAAA 266375 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC-- 16608 | | || |||||| ||||||| ||| |||||| | |||||| | ||| |||| Sbjct 266376 CGAGAGGAGTCTTGAAGGTCTTCCTTGAGAACGTTATTCGTGATGCGGT-CAC-ATACTG 266433 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 ||| ||||| || || ||||| |||||| | |||||| |||||||||| ||||||| || Sbjct 266434 CGAACACGCCAAGCGGAAGACAGTCACCGCAATGGATGTCGTCTATGCTCTGAAACGCCA 266493 Query 16669 AGG 16671 ||| Sbjct 266494 AGG 266496 >seq836 Length=59168 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | ||||| || || || ||||||||||| |||||||||||| Sbjct 6812 GCAAAACGTCATCGTAAAGTGCTTCGTGACAATATTCAAGGAATCACTAAGCCAGCTATC 6753 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || ||||| || || ||||| ||| | || || | |||| || || | | Sbjct 6752 CGTCGTTTAGCCCGTCGAGGCGGTGTCAAACGTATTTCGGGTCTTATCTACGAGGAAACT 6693 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || ||||| | || || ||| || || | |||||| || ||| ||| Sbjct 6692 CGCAGCGTACTGAAGGTTTTTCTGGAGAATGTGATTCGTGATGCGGTCACGTATTGTGAG 6633 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| ||||| || || | |||||| |||| |||||| | ||||| |||||| Sbjct 6632 CATGCCAAACGCAAGACCGTTACTGCTATGGATGTCGTTTATGCACTTAAACGCCAAGGC 6573 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | ||||| || || Sbjct 6572 CGAACGTTGTATGGATTCGG 6553 >seq253 Length=310176 Score = 122 bits (134), Expect = 1e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| ||||| || |||||||| || ||||| ||||| |||||| Sbjct 259868 GCTAAGCGTCATCGCAAGGTACTTCGCGACAACATCCAGGGCATCACTAAGCCGGCTATC 259927 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||| ||||| || |||||| | |||||| | ||||||| |||| | Sbjct 259928 CGACGTCTTGCTCGTCGAGGTGGTGTGAAGCGTATTTCTGGACTCATCTATGAGGAGACT 259987 Query 16553 CGTGATGTTTTGAAG 16567 || |||| ||||| Sbjct 259988 CGCAGTGTTCTGAAG 260002 >seq34 Length=943586 Score = 98.7 bits (108), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | | |||| |||||||||| || |||||||||||||| || Sbjct 704696 GCAAAGAGGCATCGCAAGGTGT-TTCGTAATAACATCCACGGCATCACCAAGCCAGCAAT 704638 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | || ||||| |||||||| |||||| | || || || | | |||||| Sbjct 704637 TCGCCGTATTGCCCGTCGAGGTGGAGTAAAGCGTATTTCGGGTTTCATGGACAAAGAGAC 704578 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | | |||| ||||| | ||| ||| |||| ||||||| || |||| ||| Sbjct 704577 ACGAGGCATCCTGAAAGTCTTCTTGGAGAACGTCATCCGTGATGCTGTCACCTATTGCGA 704518 Query 16612 GCA 16614 ||| Sbjct 704517 GCA 704515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063324980684