Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq293 95.1 1e-14 seq10797 91.5 1e-13 seq139 91.5 1e-13 >seq293 Length=269193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||||||| || | |||||| |||||||||| ||||| Sbjct 94734 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACACTCGAAGTGGAAGCGTCT 94675 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| ||||||| || ||||||||||| || ||||| || Sbjct 94674 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 94615 Query 25119 CAGCG 25123 ||||| Sbjct 94614 CAGCG 94610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || ||| | ||||| | || ||||| |||| Sbjct 96563 ATGCAAATATTTGTGAAGACGTTGACTGGCAAAACTATCACTCTGGAGGTGGAAGCGTCG 96504 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| |||||||||||||| || || Sbjct 96503 GACACAATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 96444 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| |||| || || || Sbjct 96443 CAGCGCCTTATCTTCGCTGG 96424 >seq10797 Length=241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | ||||| || | || ||| ||||||||||||| || Sbjct 1 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 60 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| || ||||| |||||| Sbjct 61 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 120 Query 25119 CAGCG 25123 ||||| Sbjct 121 CAGCG 125 >seq139 Length=456087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | ||||| || | || ||| ||||||||||||| || Sbjct 409785 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 409726 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| || ||||| |||||| Sbjct 409725 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 409666 Query 25119 CAGCG 25123 ||||| Sbjct 409665 CAGCG 409661 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | ||||| || | || ||| ||||||||||||| || Sbjct 401180 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 401121 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| || | || |||||| Sbjct 401120 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 401061 Query 25119 CAGCG 25123 ||||| Sbjct 401060 CAGCG 401056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433259407969220