Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq700 118 9e-22 seq293 111 1e-19 seq350 87.8 2e-12 seq3674 82.4 6e-11 seq139 82.4 6e-11 >seq700 Length=91371 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || |||||| |||| ||||| |||||| | | Sbjct 89533 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 89592 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||||||||||||||| || Sbjct 89593 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 89652 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||||||||| ||||| Sbjct 89653 CAACGTCTTATATTCGCCGG 89672 >seq293 Length=269193 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || ||||| || ||||||||||| ||||||| || |||||| | | Sbjct 97099 GATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTC 97040 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || ||||| || || || |||||||| || || ||||| ||||| Sbjct 97039 GGATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 96980 Query 22338 ACAACGTCTTATATTTGCCGGCAA 22361 ||||||||||| || ||||| || Sbjct 96979 GCAACGTCTTATCTTCGCCGGTAA 96956 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || | ||| | || ||||| | || Sbjct 94179 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 94120 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || |||||||| ||||||||||| || |||||||| Sbjct 94119 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 94060 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| |||||||| | ||||| ||| ||| | || || || ||| Sbjct 94059 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 94000 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 93999 ATCCAGAAGGAGTCCAC 93983 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || || || ||||| |||||||| |||| || || ||||| | | Sbjct 95153 GATGCAAATTTTCGTGAAGACGTTAACGGGTAAAACCATCACACTCGAGGTGGAGGCGTC 95094 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || | || || || ||||||||||||||||| ||||| ||||| Sbjct 95093 CGATACAATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCA 95034 Query 22338 ACAACGTCTTATATTTGCCGG 22358 || || || || ||||| || Sbjct 95033 GCAGCGGCTCATCTTTGCTGG 95013 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| ||||||||| | |||||| ||||| ||||||| || |||||||| |||||| Sbjct 96163 TTTGCAGGCAAACAGCTCGAGGATGGACGCACACTCTCCGACTATAACATTCAGAAAGAA 96104 Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || | ||| | || ||||||||||| || ||| Sbjct 96103 TCAACGTTGCATCTCGTGTTGCGATTGCGTGGCGGT 96068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || ||||| ||||||| || |||||| | | Sbjct 96563 ATGCAAATATTTGTGAAGACGTTGACTGGCAAAACTATCACTCTGGAGGTGGAAGCGTCG 96504 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||||||||| || |||||||| ||||| Sbjct 96503 GACACAATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 96444 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| || || || Sbjct 96443 CAGCGCCTTATCTTCGCTGG 96424 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||| | || || || ||| ||||||| |||||||| | | Sbjct 97960 ATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTGGAGGCGTCA 97901 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || || ||||| ||||| || || || || ||| Sbjct 97900 GATACAATTGAGAACGTCAAGGCCAAGATACAGGACAAAGAGGGCATCCCGCCTGACCAA 97841 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || || ||||| Sbjct 97840 CAACGTCTCATCTTCGCCGG 97821 >seq350 Length=232170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || | ||||| |||||||||| || | || || ||||| || | Sbjct 123673 AAGATGCAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCT 123614 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 123613 TCGGATACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGAC 123554 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 || || ||||| || || ||||| Sbjct 123553 CAGCAGCGTCTGATCTTCGCCGG 123531 >seq3674 Length=682 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || |||||| | || | ||||| || || | Sbjct 435 ATGCAAATCTTCGTCAAAACGCTCACTGGCAAAACGTTGACGTTGGAAGTCGAGCCCTCT 376 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | ||| | || |||| || |||||||||||||| || || || ||||||||| Sbjct 375 GATGCAGTGCAGCATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCCGATCAA 316 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || ||||| || || Sbjct 315 CAGCGACTCATATTCGCAGG 296 >seq139 Length=456087 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || |||||| | || | ||||| || || | Sbjct 278494 ATGCAAATCTTCGTCAAAACGCTCACTGGCAAAACGTTGACGTTGGAAGTCGAGCCCTCT 278553 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | ||| | || |||| || |||||||||||||| || || || ||||||||| Sbjct 278554 GATGCAGTGCAGCATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCCGATCAA 278613 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || ||||| || || Sbjct 278614 CAGCGACTCATATTCGCAGG 278633 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || |||||| | || | ||||| || || | Sbjct 408804 ATGCAAATCTTCGTCAAAACGCTCACTGGCAAAACGTTGACGTTGGAAGTCGAGCCCTCT 408745 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | ||| | || |||| || |||||||||||||| || || || ||||||||| Sbjct 408744 GATGCAGTGCAGCATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCCGATCAA 408685 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || ||||| || || Sbjct 408684 CAGCGACTCATATTCGCAGG 408665 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || | || || || ||| |||| ||||| || || | || Sbjct 410285 ATGCAGCTCTTTGTCAAGACGCTTACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTCC 410226 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || ||||| |||||||||||||| || ||||| || Sbjct 410225 GACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 410166 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || |||||||| Sbjct 410165 CAACGTCTCATCTTTGCCGG 410146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419661560730220