Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq732 87.8 2e-12 seq199 87.8 2e-12 seq738 86.0 7e-12 seq231 86.0 7e-12 seq111 86.0 7e-12 seq293 82.4 8e-11 seq164 82.4 8e-11 >seq732 Length=83922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 35493 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 35552 Query 57067 TACTACCGAGGATTGAAT 57084 |||||||||||| || || Sbjct 35553 TACTACCGAGGACTGCAT 35570 >seq199 Length=371241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 242949 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 242890 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 242889 TACTACCGAGGAT 242877 >seq738 Length=82017 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 7309 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 7250 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 7249 TACTACCGAGGA 7238 >seq231 Length=335268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 192289 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 192230 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 192229 TACTACCGAGGA 192218 >seq111 Length=530261 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 516526 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 516585 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 516586 TACTACCGAGGA 516597 >seq293 Length=269193 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || |||| ||||||||||| || |||||||| || |||||||| | Sbjct 95154 CCTCCTCTCAATCGCAGCACCAAATGCAGCGTAGATTCCTTTTGTATGTTGTAATCTGAT 95213 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATAT 42079 ||||| || |||| || ||||||||||| || ||||| Sbjct 95214 AGAGTGCGACCGTCTTCAAGCTGCTTACCTGCAAATAT 95251 >seq164 Length=426221 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| | |||| | ||||||||||| ||||||||||||| Sbjct 248084 CTCCCCGGCCGGGAATCGAACCCGGATCTCGCACGTGACAGGCGCGGATACTCACCACTA 248025 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 248024 TACTACCGAGGACTG 248010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543124609401920