Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq293 111 2e-19 seq350 82.4 8e-11 >seq293 Length=269193 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | |||||| || || | || || || || || ||||| || || | Sbjct 93953 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 94012 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| || || || ||||| ||| | ||||| |||||||| ||||| || Sbjct 94013 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 94072 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||||| ||| ||| | ||||| || ||||| Sbjct 94073 ATACCCTCCTTATCTTGAATCTTG-GCTTTCACATTCTCGATAGTATCGGACGCCTCCAC 94131 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||| |||| || || |||||||||||||| Sbjct 94132 CTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 94179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||| || ||||| || |||||||| || || |||||| ||| || Sbjct 94604 ATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCCTTGACGTTT 94663 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| || |||||||| | || | |||||||||||||| ||||| ||| Sbjct 94664 TCGATAGTGTCAGACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCAACGTTTTCACG 94723 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 94724 AAGATCTGCAT 94734 >seq350 Length=232170 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||||| | || || ||||||||||||||||||||||| || || || || || ||| | Sbjct 123531 CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCC 123590 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || | ||||| || || ||||| | |||| ||||| ||||| | Sbjct 123591 TTCACATTTTCAATAGTATCCGAAGCCTCGACTTCGAGTGTTATTGTCTTACCGGTTAGG 123650 Query 64424 GTTTTTACGAAAATTTGCATTTT 64446 ||||| | ||| |||||||| || Sbjct 123651 GTTTTGATGAAGATTTGCATCTT 123673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499563682666720