Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq293 89.7 5e-13 >seq293 Length=269193 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | ||||||||||| |||||||| || || || ||| |||||| | Sbjct 94595 CCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCC 94654 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTC-TCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| | ||||| ||||| | || | || ||||||| || | || |||||||||| Sbjct 94655 TTGACGTTTTCGATAGTGTCAG-ACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCAA 94713 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 ||||| || || |||||||| Sbjct 94714 CGTTTTCACGAAGATCTGCAT 94734 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 ||||| |||| || || |||||||| || || ||||||||||| ||| ||| ||| | Sbjct 95544 CCAGCAAAGATTAAACGTTGCTGATCTGGCGGAATGCCCTCCTTATCCTGGATCTTCGCC 95603 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| ||||| | |||||| || | ||| | || ||||| || | | Sbjct 95604 TTAACGTTCTCGATCGTGTCGGATGCCTCGACCTCCAGGGTAATGGTCTTGCCTGTTAAA 95663 Query 127094 GTTTTTACAAAAATCTGCAT 127113 ||||| ||||| |||||||| Sbjct 95664 GTTTTCACAAAGATCTGCAT 95683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475423602445120