Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq293 95.1 1e-14 seq10797 91.5 1e-13 seq139 87.8 2e-12 >seq293 Length=269193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | ||| || || || || || ||||| ||||| ||||| || Sbjct 93953 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 94012 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| |||||| || || | || | ||| ||||| || ||||| Sbjct 94013 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 94072 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||||||||| || ||| | || | || ||||| | ||| || Sbjct 94073 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACC 94132 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 94133 TCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 94179 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || || |||||||| || ||||||||||| || ||||| || | | || | | | || | Sbjct 95553 ATTAAACGTTGCTGATCTGGCGGAATGCCCTCCTTATCCTGGA-TCTTCGCCTTAACGTT 95611 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || | |||||||| | |||||| || || |||| || ||||| |||| |||||| || Sbjct 95612 CTCGATCGTGTCGGATGCCTCGACCTCCAGGGTAATGGTCTTGCCTGTTAAAGTTTTCAC 95671 Query 45329 AAAAATTTGCAT 45340 ||| || ||||| Sbjct 95672 AAAGATCTGCAT 95683 >seq10797 Length=241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| || || ||||| || || || ||||| || || || ||||| Sbjct 140 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCCTGGATTTTCGCC 81 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | ||||| || ||||| |||||||| |||| ||| ||||||||||| Sbjct 80 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAGC 21 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||| Sbjct 20 GTCTTGACAAATATCTGCAT 1 >seq139 Length=456087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| || || ||||| || | || ||||| || || || ||||| Sbjct 401041 CCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGCC 401100 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | ||||| || ||||| |||||||| |||| ||| ||||||||||| Sbjct 401101 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAGC 401160 Query 45321 GTTTTTACAAAAATTTGCATC 45341 || || ||||| || |||||| Sbjct 401161 GTCTTGACAAATATCTGCATC 401181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451929817280480