Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq293 87.8 2e-12 seq139 82.4 9e-11 >seq293 Length=269193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || |||| ||||| ||||| ||| |||||||| || ||||| || ||| Sbjct 95154 CCTCCTCTCAATCGCAGCACCAAATGCAGCGTAGATTCCTTTTGTATGTTGTAATCTGAT 95213 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 46464 |||||||| |||| || |||||||| || || ||||| Sbjct 95214 AGAGTGCGACCGTCTTCAAGCTGCTTACCTGCAAATAT 95251 >seq139 Length=456087 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| |||| ||||| | || || |||| ||| |||||| ||||||||||||||||| Sbjct 279118 GCCGCCTCGCAAACGAAGAACGAGGTGCAGCGTAGACTCCTTCTGGATATTGTAGTCGGA 279059 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 ||||| || ||||| ||||| |||||||| Sbjct 279058 GAGAGTACGGTCGTCCTCGAGTTGCTTGCC 279029 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| |||| ||||| | || || |||| ||| |||||| ||||||||||||||||| Sbjct 408177 GCCGCCTCGCAAACGAAGAACGAGGTGCAGCGTAGACTCCTTCTGGATATTGTAGTCGGA 408236 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 ||||| || ||||| ||||| |||||||| Sbjct 408237 GAGAGTACGGTCGTCCTCGAGTTGCTTGCC 408266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565146633545760