Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq293 102 8e-17 seq116 93.3 4e-14 >seq293 Length=269193 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || ||||| || || || | || || ||||| || Sbjct 94179 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 94120 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || || | || || ||||| || || |||| || Sbjct 94119 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 94060 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||||||||||| ||||| |||| || ||||| ||||| ||| Sbjct 94059 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 94000 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || | ||||| ||| Sbjct 93999 ATCCAGAAGGAGTCCACTCTCCACCTCGTGCTTCGT 93964 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 38379 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCG 38438 || || || ||||| || |||| ||||| || || |||||||| ||||||||| | Sbjct 95245 GCAGGTAAGCAGCTTGAAGACGGTCGCACTCTATCAGATTACAACATACAAAAGGAATCT 95186 Query 38439 ACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||||||||| |||||||| || Sbjct 95185 ACGCTGCATTTGGTGCTGCGATTGAGAGGAGG 95154 >seq116 Length=522778 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || || ||||| || || |||||| ||||| || ||||||||||| || |||| Sbjct 251911 CCTCATCTCTTGAAATAAGCTCATTGCTGTGCGTCAATCCAGGCATGAGGCCACGCTTTT 251852 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGA 133015 ||||||||||||| || || || || |||||||| |||| Sbjct 251851 TGAGCCAAAATATCGCCGCAAAGCTTCCCGAAAAAAAGA 251813 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 |||||||||| |||||||| | |||||| || ||||||||| || || ||| | || | Sbjct 250467 TCGAATACATCTCCGAGTGAATGTTCTCTATCATGATTTGAAAACCATAGAAGAAACGTG 250408 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||| ||||| ||||| || ||||||||||| ||| Sbjct 250407 CCTCAGGAACCTGTACTTCCTGGGCGAAACGCTCCACC 250370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500091596945920