Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq340 168 5e-36 seq177 156 3e-32 seq306 116 3e-20 seq167 87.8 1e-11 >seq340 Length=240320 Score = 168 bits (186), Expect = 5e-36 Identities = 934/1472 (63%), Gaps = 37/1472 (3%) Strand=Plus/Minus Query 517243 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 517302 |||||| || ||| ||| |||||| | ||| || || || |||| ||| || ||||| Sbjct 223599 TGTTGACTTGTCACATGCACTCACATGCATAATGCCGTTTGCGTCCAGATCGAAAGTGAC 223540 Query 517303 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 517362 ||||| ||||| || || | | || ||||| ||||| | | || |||||| Sbjct 223539 CTCAATCTGAGGAACTCCACGTGGTGCGGGTGGAATCCCACTGAGGTCGAACTTTCCCAA 223480 Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 517422 ||||| || || || | ||||| ||||| |||| ||| || | || ||| Sbjct 223479 CAGGTTATTGTCCTTCGTCATCGCACGTTCGCCCTCAAAAACTTGAATGCTGACGCCAGG 223420 Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 517482 || || || ||||| || || || | | | |||| ||||| || || || Sbjct 223419 CTGGTTGTCGGAATAGGTGGTGAACGTTTGTGTTGCTTTAGTTGGAATACGAGTATTCCT 223360 Query 517483 ATCAA-TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 517541 || | |||| ||| |||| |||||||| || ||||| | || | || || ||||||| Sbjct 223359 TTCCACTAATTTTG-TCATCATACCACCAGCCGTTTCAATTCCCAATGATAGTGGAGTGA 223301 Query 517542 CATCAACTAGGACAATATT-TTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGCT 517597 ||||||| | | || | || | | | || ||| |||| || | || | || Sbjct 223300 CATCAACCAATAGAACGTCCTTCACGGTCTT-ATC---TTGAACACCGCTCAGCACGGCA 223245 Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657 ||||||| || ||||| || ||||| || ||||||||||| | | ||| || | | Sbjct 223244 GCTTGAACTGCGGCACCGTAAGCAACTGCCTCATCAGGATTGATCGAAAGATTCAGCTGT 223185 Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCC 517716 || |||||||| || | || || | ||| ||||| || || | || || || || Sbjct 223184 TTGCCATTGAAGAATTCGCTGAGTAGCT-TCTGCACCTTCGGTATTCTAGTAGAGCCACC 223126 Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGA--ATCCAATAAAACTTTT 517774 ||| | |||||||||| | || || | | | || ||| | | | Sbjct 223125 AACAAGCACAATTTCATCGA--TGGCCTTCTTGTCGATGCGAGCATCACGAATGGCCTGC 223068 Query 517775 TCAACGGGTTCAAGACCCGCTCT---AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 517831 || || || ||||| || | | ||||| || || || |||||||||||| ||| Sbjct 223067 TCGACAGGCTCAAG---CGTTTTCCGAAACAGATCAGAGCAGAGTTCTTCGAATCGTGCT 223011 Query 517832 CTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT 517891 | ||| | | ||| | || ||||||||| | | || | ||||| | | | Sbjct 223010 CGAGTGATCTTCCCATGGAAGTCGATTCCTTCGTGAAGACTGTCGATTTCAACAATTGCT 222951 Query 517892 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG 517951 || | || || |||| | || || |||||||| ||||| || | | || | Sbjct 222950 TGCGCAGAGCTGGAGAGTGTCCTCTTGGCGCGTTCACACGCTGTTCTCAAACGACGAAGT 222891 Query 517952 GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 518011 ||| | || || ||||| || | || ||| |||| || || || | Sbjct 222890 GCTCTCGCATTTTTCTTCAAGTCCTTGCCGTAACGTCTTCTGAATTCCTCTGCAAAGTGA 222831 Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 | || | ||| | |||||||||||| || |||| | |||| || | || | | Sbjct 222830 TTAACCATACGGTCATCAAAATCTTCGCCACCCAGATGCGTATCGCCAGCTGTGGACTTC 222771 Query 518072 ACTTGGAA-AAG--TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCC 518128 |||| ||| ||| ||| || | | || || || | || || || || |||||| Sbjct 222770 ACTTCGAACAAGGATCCCTCGGCGATAGTCAGAATGGAGACGTCGAAAGTCCCTCCACCC 222711 Query 518129 ATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAA 518188 | |||||| ||||| || ||| |||| | | | || || |||||||| || || | Sbjct 222710 AGATCAAATATAAGCACGTTCTTTTCGTCAGATAGCTTCTTGTCAAGACCGTAAGCGAGC 222651 Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 || || |||||||| || || || ||||||| || ||||| ||||| | ||| Sbjct 222650 GCGGCTGCAGTTGGCTCGTTTATGATTCTCAGGGGCTTCAGACCTGCAATGATGGACGCA 222591 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCA 518308 || || ||||| || | ||| ||||| ||||| || || || || || || || || Sbjct 222590 TCCTTCGTGGCCTGGCGTTGACTGTCGTTGAAATAGGCCGGGACTGTGATTACTGCCTCG 222531 Query 518309 GTTACTTCTTTACCAATATAAGCGCT-TGCCGTTTGTTTCATTTTACTTAAAATCATTGA 518367 | || | |||| || ||| || ||| || | |||||| || | || |||||| Sbjct 222530 GCAACCGGATGGCCAAGAT-AGCTCTCTGCAGTCTCTTTCATCTTGACGAGAACCATTGA 222472 Query 518368 TGAAATTTGTTCTG--GGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATAT 518425 || || | ||| | | ||| | ||| | ||||| || ||| || | | Sbjct 222471 AGAGATCTCTTCAGGCGTGAAGA-CCCTTTTCTCGCCTTTGA-ATTCTACCTCGACGGCT 222414 Query 518426 GGTTTATTACCAACATT---AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACA 518482 || || ||| || || ||||| || ||||||| |||||| ||| || Sbjct 222413 GG---CTTGCCAGTTTTCGGAACCACTTTGAAGGGCCAGTTGCGCATATCCTGTTGCACC 222357 Query 518483 CTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA 518542 | |||||| || | || || || | | || || || || || ||||| ||| Sbjct 222356 TTAGGGTCATCGAACTTCCTGCCGATAAGCCTCTTCGCGTCGAAGATCGTATTCTCAGGA 222297 Query 518543 TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAA 518602 ||| || |||| | || || ||||||||||| ||| |||| || || || || | Sbjct 222296 TTACGAGCCACTTGCTCCTTAGCCGCATCTCCAATAAGACGTTCCGTATCGGTGAACGCG 222237 Query 518603 ACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTT 518662 || | || || ||||| || ||||| ||||| |||||||| || || | ||||| Sbjct 222236 ACGAAAGAAGGTGTTGTTTTGTTGCCTTGGTCATTGGCAATAATCTCGACGTGGCCATTC 222177 Query 518663 TGCCATACACCTACACAACTAAAAGTTGTTCC 518694 || | || || ||||||||| | || || || Sbjct 222176 TGATAGACGCCGACACAACTATACGTCGTACC 222145 >seq177 Length=409541 Score = 156 bits (172), Expect = 3e-32 Identities = 373/556 (67%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| || | ||||| || || ||||| || || |||| ||| ||| Sbjct 128716 TTCTTGTCAAGACCATAGGCGAGTGCAGCGGCTGTGGGTTCGTTGATGATTCGCAACACA 128657 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | || ||||| | || || || || |||||||| | || ||||||||||||| Sbjct 128656 TTCAAGCCGGCAATCGTGCCAGCGTCCTTCGTGGCTTGACGCTGGCTATCGTTAAAATAT 128597 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342 || || || || || ||||| || ||| ||| || | ||||| || |||| Sbjct 128596 GCCGGCACTGTGATGACGGCTTCTCGCACTGGACGACCGATGAA--CGCTTCGGCGGTTT 128539 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG--AATATTGCTTGGATTC 518400 ||||||||| | |||||| ||||| || | || || | || | | || ||| Sbjct 128538 CTTTCATTTTCACAAGAATCATCGATGAGATCTCCTCGGGAGTGAAAACTCGTTT--TTC 128481 Query 518401 AT-TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC---TTTAAATG 518456 | ||||| | |||| || | ||||| ||| | || ||| ||| |||| Sbjct 128480 ACCTTTGAACTCC-ACTTGAACAGCCGGTTTC---CCACCTTTGGAAACGATTTTGAATG 128425 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 |||| | ||||||| || || | |||| | | | | || || | || | Sbjct 128424 GCCAATGACGCATATCTTCCTGTACTTTAGGGTCGTCCATTTTGCGGCCTATGATGCGCT 128365 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 ||||||| || || ||||| ||||| || |||||| | || | || || | Sbjct 128364 TTGCATCGAATATTGTATTTTCCGGATTTCGAGCCACTTGATCGTAAGCCGGATTACCGA 128305 Query 518577 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 518636 ||| | | || | || ||||||| ||||| || || ||||| ||| |||||||||| Sbjct 128304 TCAAACGCTCGCTTTCAGTAAATGCCACATAAGACGGTGTTGTCTTATTGCCTTGATCAT 128245 Query 518637 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTA 518696 | ||||| ||||| || ||||||| ||| |||| || |||||||| |||| || |||| Sbjct 128244 TGGCAATTATTTCCACCTTACCATATTGGAATACTCCAACACAACTGTAAGTAGTACCTA 128185 Query 518697 AATCAATACCAATAGC 518712 | || || |||| ||| Sbjct 128184 AGTCGATTCCAACAGC 128169 >seq306 Length=263620 Score = 116 bits (128), Expect = 3e-20 Identities = 173/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 |||| || ||||||||| ||||||||| ||| ||| | | ||| || |||| | || Sbjct 225687 TAACCTTGAATGGCCAGACTTTCATATCCTCTTGTACAGTCTTGTCGTTGTAATCGCGAC 225746 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || | ||||| ||||| |||| ||||| || || || | ||| | |||| Sbjct 225747 CGATAAGCCGTTTGGCATCGAAAACCGTATTCTCAGGGTTGATCGTGAGTTGGTTCTTGG 225806 Query 518565 CTGCATCTCCAATCAGATGTTC---TGTCTC---TGTAAATGAAACATATGATGGAGTTG 518618 | ||||| || |||||| |||| ||| || ||| || | |||||||||||| || Sbjct 225807 CCGCATCACCGATCAGACGTTCACCTGTATCGCTTGTGAACGCAACATATGATGGTGTGA 225866 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | |||||||| || || || ||||| ||||| || ||||||| | ||||| |||| Sbjct 225867 TACGATTACCCTGGTCGTTTGCAATGATTTCCACACGTCCATTTTTGAACACACCCACAC 225926 Query 518679 AACT 518682 |||| Sbjct 225927 AACT 225930 >seq167 Length=422677 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| |||||| || || || || |||||| |||||||||||| || |||||| | Sbjct 916 AAAACCGTATTGTGCGGGTTCATCGCCACTTGATTTTTGGCTGCATCGCCGATCAGACGC 975 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || || ||||| || | |||||||| || ||||||||||||||| || Sbjct 976 TCCGTATCTGTGAACGCCACATATGACGGTGTTGTGCGATTACCTAGA 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780177892657528