Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq177 237 2e-57 seq340 192 7e-44 >seq177 Length=409541 Score = 237 bits (262), Expect = 2e-57 Identities = 624/939 (66%), Gaps = 25/939 (3%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||||| ||| || ||||| | || || || || |||| ||| || | || || Sbjct 129388 GTCATAACACCGCCGGCCGTTTCAATGCCGAGTGAAAGGGGTGCCACATCAACAAGCAAT 129329 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | || | |||| || | | |||| | | || |||||||| || | |||||| Sbjct 129328 ACATCCTTCACAGTTTTATCCTGAACACCAGAAAGAATTGCGGCTTGAACGGCCGCCCCA 129269 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 |||||||||||||||||||| || |||| | ||||| ||||| ||||| || | || Sbjct 129268 TATGCGACCGCCTCATCGGGATTTATCGAATGATTCAAATCTTTGCCGTTGAAGAACTCA 129209 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || ||||| ||| | ||| || ||||| || || ||||| |||| || | ||||| | Sbjct 129208 GCTAGCATTTTTTGCACTTTGGGAATTCGCGTGGAACCACCAACCAGAATCACTTCAT-C 129150 Query 7166 ACTTTCGAT-TTATCGATCTTTGAGTCTCGAAGTGTTTTT--TCG--ACAGGTTCCATAC 7220 | ||| | ||||| | | ||| ||| ||| | ||| ||||| || | Sbjct 129149 AATTTGGCGCTTATCCAAGT--GAGCATCG--GTGATCGCCCTCGCAACAGGCTCGAGGG 129094 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 || ||||| | || ||||| || ||||| || ||||| || | ||| | | | Sbjct 129093 TCTTCCGGAAAAGATCGATACATAGCTCCTCGAAGCGTGCCCGTGAAATTTTCGAGTTCA 129034 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAA---GATA 7337 || || || ||||| | ||| | ||| | | | | |||||||| || | Sbjct 129033 TGTCCACTCCTTCGTAGAGACTATCCACTTCGACGACGGCCT---CCGTCGAACTGGACA 128977 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 | || || || || |||||||| ||||| || | ||| | | | || || | | | Sbjct 128976 AGGTACGTTTAGCACGCTCACAAGCCGTACGAAGACGTCTCAATGATCGAGGACTTCGTG 128917 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | ||||| || | |||||| |||||||| ||| ||| | | | | || Sbjct 128916 ATATATCCTTGCCAGTTTTACGCTTAAACTCATCAATGAAAAATTTTACCATACGATCAT 128857 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA---C 7514 ||||||| || ||||||| |||||||| || || |||| || |||||||| | | | Sbjct 128856 CGAAATCCTCTCCACCCAGATGTGTATCACCAGCTGTCGACTTCACTTCAAACAAAGAGC 128797 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 || || |||| | | |||||| || || |||||||| || |||||| ||||| | Sbjct 128796 CTTCTGCAATCGAGAGAATCGAAACGTCGAAGGTACCACCGCCTCAGTCAAAGATGAGCA 128737 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 |||| ||| | ||||| || ||||| || |||| || || || || |||| Sbjct 128736 CGTTTTGATCCCCACGCAGCTTCTTGTCAAGACCATAGGCGAGTGCAGCGGCTGTGGGTT 128677 Query 7635 CATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 | || || || || || ||| |||| ||| ||||| || | || || ||||| ||||| Sbjct 128676 CGTTGATGATTCGCAACACA-TTCAAGCCGGCAATCGTGCCAGCGTCCTTCGTGGCTTGA 128618 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||||||| || ||||| || || | ||| || || ||| |||| Sbjct 128617 CGCTGGCTATCGTTAAAATATGCCGGCACTGTGATGACGGCTTCTCGCACTGGACGACCG 128558 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG-- 7811 | ||| ||| ||| | ||||||||||| ||||| ||||||||| ||||| || | Sbjct 128557 ATGAACGCTTCGGCGGTTTCTTTCATTTTCACAAGAATCATCGATGAGATCTCCTCGGGA 128498 Query 7812 CCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAA 7850 | ||||| || ||||||| || || || |||| || Sbjct 128497 GTGAAAACTCGTT--TTTCACCTTTGAACTCCACTTGAA 128461 >seq340 Length=240320 Score = 192 bits (212), Expect = 7e-44 Identities = 926/1457 (64%), Gaps = 33/1457 (2%) Strand=Plus/Minus Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||||| |||| || ||| || ||||| || | |||||| | || | ||| || || Sbjct 223583 GCACTCACATGCATAATGCCGTTTGCGTCCAGATCGAAAGTGACCTCAATCTGAGGAACT 223524 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||||||| |||||| || | | || || | || | | | || ||| || Sbjct 223523 CCACGTGGTGCGGGTGGAATCCCACTGAGGTCGAACTTTCCCAACAGGTTATTGTCCTTC 223464 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | || |||||| || ||| | |||| ||| | || |||| || || || Sbjct 223463 GTCATCGCACGTTCGCCCTCAAAAACTTGAATGCTGACGCCAGGCTGGTTGTCGGAATAG 223404 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || | ||| ||||| | |||| |||||| ||||| || | | ||| Sbjct 223403 GTGGTGAACGTTTGTGTTGCTTTAGTTGGAATACGAGTATTCCTTTCCACTAATTTTGTC 223344 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| ||||| | ||| | || || || || || || | | || | | Sbjct 223343 ATCATACCACCAGCCGTTTCAATTCCCAATGATAGTGGAGTGACATCAACCAATAGAACG 223284 Query 6989 TCTTGAACAGATTCGTTCCCTTCAC-CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGT 7046 || | || | || | | | || ||| | || | ||| ||||| || | || |||| Sbjct 223283 TCCTTCACGG--TCTTATCTTGAACACCGCTCAGCACGGCAGCTTGAACTGCGGCACCGT 223226 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||| || || |||| |||||| | ||| || || || ||| || Sbjct 223225 AAGCAACTGCCTCATCAGGATTGATCGAAAGATTCAGCTGTTTGCCATTGAAG-AATTCG 223167 Query 7107 ATAAC-ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | | || | ||||| |||| || || ||||| || | || ||||||| Sbjct 223166 CTGAGTAGCTTCTGCACCTTCGGTATTCTAGTAGAGCCACCAACAAGCACAATTTCATCG 223107 Query 7166 A---CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | | ||| || ||||| | || |||| | | |||||||| || | | Sbjct 223106 ATGGCCTTC---TTGTCGATGCGAGCATCACGAATGGCCTGCTCGACAGGCTCAAGCGTT 223050 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 || || |||| || || ||||| || || ||||| || || || || ||| Sbjct 223049 TTCCGAAACAGATCAGAGCAGAGTTCTTCGAATCGTGCTCGAGTGATCTTCCCATGGAAG 222990 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || |||| | || ||||||| ||| ||| || | || | || Sbjct 222989 TCGATTCCTTCGTGAAGACTGTCGATTTCAACAATTGCTTGCGCAGAGCTGGAGAGTGTC 222930 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC-CGGAAAT 7401 | ||| ||||| |||||||| |||| ||||||||||| || | || || | || Sbjct 222929 CTCTTGGCGCGTTCACACGCTGTTCTCAAACGACGAAGTGCTCTCGCATTTTTCTTCAAG 222870 Query 7402 ATCTTTC--TTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 ||| | | | || | | | || || || | ||||| || | | ||| Sbjct 222869 TCCTTGCCGTAACGTCTTC---TGAATTCCTCTGCAAAGTGATTAACCATACGGTCATCA 222813 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA----GATACC 7515 |||||||| ||||||| || ||||| || || || | || ||||| || ||| || Sbjct 222812 AAATCTTCGCCACCCAGATGCGTATCGCCAGCTGTGGACTTCACTTCGAACAAGGATCCC 222753 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || | || | | | || || || || || || |||||||| ||||| || || || Sbjct 222752 TCGG-CGATAGTCAGAATGGAGACGTCGAAAGTCCCTCCACCCAGATCAAATATAAGCAC 222694 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||||| | ||||| || |||||||| |||| || || || ||||| || Sbjct 222693 GTTCTTTTCGTCAGATAGCTTCTTGTCAAGACCGTAAGCGAGCGCGGCTGCAGTTGGCTC 222634 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || | || ||||| || ||||| | | |||||| ||||| || || || Sbjct 222633 GTTTATGATTCTCAGGGGCTTCAGACCTGCAATGATGGACGCATCCTTCGTGGCCTGGCG 222574 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| ||||| || ||||||||||| || | || || || | || | || || Sbjct 222573 TTGACTGTCGTTGAAATAGGCCGGGACTGTGATTACTGCCTCGGCAACCGGATGGCCAAG 222514 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC-- 7813 ||| || || | |||||||| ||| |||||||| || || |||||||||| | Sbjct 222513 ATAGCTCTCTGCAGTCTCTTTCATCTTGACGAGAACCATTGAAGAGATCTCTTCAGGCGT 222454 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | | || ||| | || || || || || || || | || | | ||| Sbjct 222453 GAAGACCCTTT--TCTCGCCTTTGAATTCTACCTC---GACGGCTGGCTTGCCAGTTTTC 222399 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || | || || | | ||| | |||||| | ||| |||| |||| ||||| Sbjct 222398 GGAACCACTTTGAAGGGCCAGTTGCGCATATCCTGTTGCACCTTAGGGTCATCGAACTTC 222339 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 || |||||||| | ||| || || || | || || | || || || ||| | | Sbjct 222338 CTGCCGATAAGCCTCTTCGCGTCGAAGATCGTATTCTCAGGATTACGAGCCACTTGCTCC 222279 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || ||||| || || ||||||||||| || || || ||||||||| | || || || Sbjct 222278 TTAGCCGCATCTCCAATAAGACGTTCCGTA---TCGGTGAACGCGACGAAAGAAGGTGTT 222222 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 ||| || |||||||| || |||||||| || ||| || | || || |||||||||| Sbjct 222221 GTTTTGTTGCCTTGGTCATTGGCAATAATCTCGACGTGGCCATTCTGATAGACGCCGACA 222162 Query 8114 CACGAATACGTTGTTCC 8130 || |||||| || || Sbjct 222161 CAACTATACGTCGTACC 222145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635029686189920