Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq177 181 9e-40 seq340 98.7 8e-15 >seq177 Length=409541 Score = 181 bits (200), Expect = 9e-40 Identities = 387/569 (68%), Gaps = 18/569 (3%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 ||||||| | | |||| | || || || ||||| || || || ||||||||||| || Sbjct 128154 ATGTCAAGTAGTGCAGCTGTTGGAATCGACTTAGGTACTACTTACAGTTGTGTTGGAGTA 128213 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | ||| ||||||| || ||||| ||||||||||||||||| || | || || || ||| Sbjct 128214 TTCCAATATGGTAAGGTGGAAATAATTGCCAATGATCAAGGCAATAAGACAACACCGTCT 128273 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACT 550156 ||||| | || || |||| || | ||| | ||| || | || | |||||| || Sbjct 128274 TATGTGGCATTTACTGAAAGCGAGCGTTTGATCGGTAATCCGGCTTACGATCAAGTGGCT 128333 Query 550157 GGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 | ||||| ||||| || || ||||| || || | || || | | | | || Sbjct 128334 CGAAATCCGGAAAATACAATATTCGATGCAAAGCGCATCATAGGCCGCAAAATGGACGAC 128393 Query 550217 TCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT---AATGTTTCTGGA 550273 | | || |||| ||||||| |||||||| ||| |||| ||| || | ||| Sbjct 128394 CCTAAAGTACAGGAAGATATGCGTCATTGGCCATTCAAAATCGTTTCCAAAG---GTGGG 128450 Query 550274 AAACCTTATATTGAA--GCTACTCATGAAGGATCTGTTAAAC-AATTTTCA--CCAGAAC 550328 ||||| | || || | ||| |||| || |||| | |||||| || || Sbjct 128451 AAACCGGCTGTTCAAGTGGAGTTCA--AAGG---TGAAAAACGAGTTTTCACTCCCGAGG 128505 Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388 | || ||||| ||| || | ||||||||||| |||| ||| || || | |||| Sbjct 128506 AGATCTCATCGATGATTCTTGTGAAAATGAAAGAAACCGCCGAAGCGTTCATCGGTCGTC 128565 Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 ||| || || || || || || || ||||||||||| || || |||||||| | Sbjct 128566 CAGTGCGAGAAGCCGTCATCACAGTGCCGGCATATTTTAACGATAGCCAGCGTCAAGCCA 128625 Query 550449 CTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 | || || ||||| ||| ||||| || | ||||| | || || ||||| ||||| || Sbjct 128626 CGAAGGACGCTGGCACG-ATTGCCGGCTTGAATGTGTTGCGAATCATCAACGAACCCACA 128684 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536 || |||||||| || ||||| ||||| || Sbjct 128685 GCCGCTGCACTCGCCTATGGTCTTGACAA 128713 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 552474 GATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTA 552533 || || ||| | || || || ||| |||| || ||||| ||||| ||||| ||||| Sbjct 133035 GACAACAATAAGCTGGGCACATTTGATTTGATGGGCATTCCACCTGCACCTCGAGGAGTG 133094 Query 552534 CCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || |||||||| || |||||||||||||| ||||| || || ||||| ||||| || Sbjct 133095 CCACAAATTGAGGTCACTTTCGATATCGACGCCAACGGTATCTTGAACGTGACAGC 133150 Score = 89.7 bits (98), Expect = 4e-12 Identities = 179/263 (68%), Gaps = 12/263 (5%) Strand=Plus/Plus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA---- 552170 ||||| | | || |||||||| || || ||||||| ||| | | ||||| || Sbjct 129151 ATGAAGTGATTCTGGTTGGTGGTTCCACGCGAATTCCCAAAGTGCAAAAAATGCTAGCTG 129210 Query 552171 AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCC 552230 ||||||| ||| || ||| | || ||| | | ||||| |||||||| || || Sbjct 129211 AGTTCTT----CAACGGCAAAGATTTGAATCATTCGATAAATCCCGATGAGGCGGTCGCA 129266 Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAA-- 552288 ||||| || || ||||||| || ||||||||||| ||| |||||| || Sbjct 129267 TATGGGGCGGCCGTTCAAGCCGCAATTCTTTCTGGTGTTCAGGAT--AAAACTGTGAAGG 129324 Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348 || | | ||||| ||||| | || || || || || | ||||| | || ||| ||| Sbjct 129325 ATGTATTGCTTGTTGATGTGGCACCCCTTTCACTCGGCATTGAAACGGCCGGCGGTGTTA 129384 Query 552349 TGACTAATCTTATCGATAGAAAT 552371 |||| ||||| || ||| ||||| Sbjct 129385 TGACGAATCTCATTGATCGAAAT 129407 >seq340 Length=240320 Score = 98.7 bits (108), Expect = 8e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 550010 GGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAAT 550069 || || || ||||||||||| || || | || ||||| | || || |||||||||||| Sbjct 222145 GGTACGACGTATAGTTGTGTCGGCGTCTATCAGAATGGCCACGTCGAGATTATTGCCAAT 222204 Query 550070 GATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTT 550129 || ||||| |||| ||| || || |||| || | ||||| || || |||| | | || Sbjct 222205 GACCAAGGCAACAAAACAACACCTTCTTTCGTCGCGTTCACCGATACGGAACGTCTTATT 222264 Query 550130 GGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAA 550188 || ||||| || || | |||| || |||||||| ||||| || || || || || Sbjct 222265 GGAGATGCGGCTAAGGAGCAAGTGGCTCGTAATCCTGAGAATACGATCTTCGACGCGAA 222323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028609135984120