Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq293 113 4e-20 seq10797 105 5e-18 seq139 102 6e-17 seq3674 89.7 4e-13 >seq293 Length=269193 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 94593 TACCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTG 94652 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || |||| | ||||||||||| ||||||||| || |||| || |||||||| | Sbjct 94653 CCTTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCA 94712 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 94713 ACGTTTTCACGAAGATCTGCAT 94734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || || || || | | |||| | | || |||| ||| Sbjct 93977 TGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTCCAGTTGT 94036 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||| ||||||||||| || || || ||||||||||| || Sbjct 94037 TTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTATCTTGAATCTTG 94096 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||| || |||| ||||| || | ||| | || ||||| || Sbjct 94097 GCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCTTGCCTGTC 94156 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 94157 AGCGTCTTCACGAAAATTTGCATG 94180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| ||||| || ||||| || ||||| ||||||||||| || ||||| || || | Sbjct 95539 GCATACCAGCAAAGATTAAACGTTGCTGATCTGGCGGAATGCCCTCCTTATCCTGGATCT 95598 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || || | || | ||||| || | || || || || || | || ||||| | Sbjct 95599 TCGCCTTAACGTTCTCGATCGTGTCGGATGCCTCGACCTCCAGGGTAATGGTCTTGCCTG 95658 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| ||||| |||||||| Sbjct 95659 TTAAAGTTTTCACAAAGATCTGCAT 95683 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | ||||||||||| || || ||||| ||||| || ||||| || Sbjct 95924 CTTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTT 95983 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | || || || | ||| ||||| || |||| ||||| ||||| Sbjct 95984 CGCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGT 96043 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 96044 GAGGGTCTTGACGAAGATCTGCAT 96067 >seq10797 Length=241 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 |||||| || |||| ||||||||| ||||| || || ||||| || || || ||||| Sbjct 141 ACCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCCTGGATTTTCGC 82 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| |||| | ||||| || | |||||||| || || | ||| |||||||||| Sbjct 81 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAG 22 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || |||||||||||||| Sbjct 21 CGTCTTGACAAATATCTGCAT 1 >seq139 Length=456087 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 |||||| || |||| ||||||||| ||||| | || ||||| || || || ||||| Sbjct 401040 ACCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGC 401099 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| |||| | ||||| || | |||||||| || || | ||| |||||||||| Sbjct 401100 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAG 401159 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || |||||||||||||| Sbjct 401160 CGTCTTGACAAATATCTGCAT 401180 Score = 102 bits (112), Expect = 6e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 |||||| || |||| ||||||||| ||||| || || ||||| || || || ||||| Sbjct 409645 ACCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCCTGGATTTTCGC 409704 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| |||| | ||||| || | |||||||| || || | ||| |||||||| | Sbjct 409705 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAG 409764 Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || |||||||||||||| |||||||| Sbjct 409765 CGTCTTGACAAATATCTGCATACCACCGCGAAGA 409798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||| ||||| | ||||||||||||||||| |||||||| || |||||||| || Sbjct 278635 TACCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCG 278576 Query 101388 GTTTTACAATTTCTACAGTG--TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || || || ||||| | || ||||| | || | ||||||||| || Sbjct 278575 CCTTGACA--TGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGT 278518 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || || |||||| Sbjct 278517 GAGCGTTTTGACGAAGATTTGCATG 278493 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||| ||||| | ||||||||||||||||| |||||||| || |||||||| || Sbjct 408663 TACCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCG 408722 Query 101388 GTTTTACAATTTCTACAGTG--TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || || || ||||| | || ||||| | || | ||||||||| || Sbjct 408723 CCTTGACA--TGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGT 408780 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || || |||||| Sbjct 408781 GAGCGTTTTGACGAAGATTTGCATG 408805 >seq3674 Length=682 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||| ||||| | ||||||||||||||||| |||||||| || |||||||| || Sbjct 294 TACCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCG 353 Query 101388 GTTTTACAATTTCTACAGTG--TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || || || ||||| | || ||||| | || | ||||||||| || Sbjct 354 CCTTGACA--TGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGT 411 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || || |||||| Sbjct 412 GAGCGTTTTGACGAAGATTTGCATG 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396215672596716