Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq177 197 9e-45 seq340 185 6e-41 seq293 89.7 3e-12 >seq177 Length=409541 Score = 197 bits (218), Expect = 9e-45 Identities = 392/573 (68%), Gaps = 23/573 (4%) Strand=Plus/Plus Query 474317 ATGTCCAGAATTGCAA---TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTT 474373 ||||| || | |||| |||| || || ||||| ||||||||||||||||| | || Sbjct 128154 ATGTCAAGTAGTGCAGCTGTTGGAATCGACTTAGGTACTACTTACAGTTGTGTTGGAGTA 128213 Query 474374 TGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCA 474433 | ||| ||||||| || ||||||||||||||||| ||||| |||| |||||||| || Sbjct 128214 TTCCAATATGGTAAGGTGGAAATAATTGCCAATGATCAAGGCAATAAGACAACACCGTCT 128273 Query 474434 TATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 ||||| | |||||||||| || | | | || || || | ||| | |||||| || Sbjct 128274 TATGTGGCATTTACTGAAAGCGAGCGTTTGATCGGTAATCCGGCTTACGATCAAGTGGCT 128333 Query 474494 TCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGAT 474553 ||||| | ||||| || || ||||| || | | || || || || | || || Sbjct 128334 CGAAATCCGGAAAATACAATATTCGATGCAAAGCGCATCATAGGCCGCAAAATGGACGAC 128393 Query 474554 ACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAA----GGTGATAAATGTTGGTGG 474609 | | || || ||||||||||||||||| || || | | ||| ||||| Sbjct 128394 CCTAAAGTACAGGAAGATATGCGTCATTGGCCATTCAAAATCGTTTCCAAA----GGTGG 128449 Query 474610 TAAACCATATATAGAA--GCAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAAC 474665 ||||| | | || | | | || |||||||| || | |||||| || || Sbjct 128450 GAAACCGGCTGTTCAAGTGGAGTTCA--AAGGTGAAA--AACGAGTTTTCACTCCCGAGG 128505 Query 474666 AAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACA 474723 | || || || ||| || | | ||||||||| ||||||| ||| ||| || | Sbjct 128506 AGATCTCATCGATGATTCTTGTGAAAATGAAAGAAACCGCCGAAGCGTTCATC--GGTCG 128563 Query 474724 AGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGC 474783 ||| || || || || || || || ||||||||||| ||| || |||||||| Sbjct 128564 TCCAGTGCGAGAAGCCGTCATCACAGTGCCGGCATATTTTAACGATAGCCAGCGTCAAGC 128623 Query 474784 AACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAAC 474843 || || || || || | ||||| || | ||||| || || || || || ||||| || Sbjct 128624 CACGAAGGACGCTGGCACGATTGCCGGCTTGAATGTGTTGCGAATCATCAACGAACCCAC 128683 Query 474844 AGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||| || ||||| || ||||||||||| ||||| Sbjct 128684 AGCCGCTGCACTCGCCTATGGTCTTGACAAGAA 128716 >seq340 Length=240320 Score = 185 bits (204), Expect = 6e-41 Identities = 395/583 (68%), Gaps = 24/583 (4%) Strand=Plus/Plus Query 474324 GAATTGCAA-----TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCA 474378 ||||||||| | || || || | || || || || |||||||| | || | || Sbjct 222117 GAATTGCAAGGCGGTGGGAATCGACCTCGGTACGACGTATAGTTGTGTCGGCGTCTATCA 222176 Query 474379 AAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGT 474438 ||||| | || || || ||||||||||||||||| || | ||||||||| || | || Sbjct 222177 GAATGGCCACGTCGAGATTATTGCCAATGACCAAGGCAACAAAACAACACCTTCTTTCGT 222236 Query 474439 TTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAA 474498 | || || || || |||| ||||||||||||||| ||||| | |||| || ||| Sbjct 222237 CGCGTTCACCGATACGGAACGTCTTATTGGAGATGCGGCTAAGGAGCAAGTGGCTCGTAA 222296 Query 474499 TCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCAC 474558 ||||| ||||| || || || || || || | || || | || || ||||| | | Sbjct 222297 TCCTGAGAATACGATCTTCGACGCGAAGAGGCTTATCGGCAGGAAGTTCGATGACCCTAA 222356 Query 474559 TGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGAT----AAATGTTGGTGGTAAAC 474614 || ||| |||||||| | ||||| || || ||| | ||| ||| || | Sbjct 222357 GGTGCAACAGGATATGCGCAACTGGCCCTTCAAAGTGGTTCCGAAA----ACTGGCAAGC 222412 Query 474615 CATATATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTC 474672 || | || | | | | ||| || | ||| | |||| || ||| | || || Sbjct 222413 CAGCCGTCGAGGTAGAATTCAAAGGCGAGA--AAAGGGTCTTCACGCCTGAAGAGATCTC 222470 Query 474673 TTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAA 474731 |||||||||| | | ||| |||||| | || || ||| | |||||||| || || Sbjct 222471 TTCAATGGTTCTCGTCAAGATGAAAGAGACTGCAGAGAGC-TATCTTGGCCATCCGGTTG 222529 Query 474732 CTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 | || |||||||| || || || || ||||| || || |||||| || || || || | Sbjct 222530 CCGAGGCAGTAATCACAGTCCCGGCCTATTTCAACGACAGTCAACGCCAGGCCACGAAGG 222589 Query 474792 ATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 ||||| | ||||||||||| || | | || || || || ||||| ||||||| Sbjct 222590 ATGCGTCCATCATTGCAGGTCTGAAGCCCCTGAGAATCATAAACGAGCCAACTGCAGCCG 222649 Query 474852 CACTTGCTTATGGTCTTGATAAGAA---TTCTGAC--AAAGAA 474889 | || ||||| |||||||| ||||| |||||| |||||| Sbjct 222650 CGCTCGCTTACGGTCTTGACAAGAAGCTATCTGACGAAAAGAA 222692 Score = 129 bits (142), Expect = 4e-24 Identities = 533/827 (64%), Gaps = 18/827 (2%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 |||||||| ||| | ||||| ||||| |||||||||||| | | | || |||| | Sbjct 222778 ACAGCTGGCGATACGCATCTGGGTGGCGAAGATTTTGATGACCGTATGGTTAATCAC--T 222835 Query 475425 GTGTTGAAGATTTCA--AGAGGAAAAATAAAGTTGATCTTTCA-ACATCTGCTAAAGCAT 475481 || || || |||| ||| | | ||| || ||| | | | ||| | |||| Sbjct 222836 TTGCAGAGGAATTCAGAAGACGTTACGGCAAG--GA-CTTGAAGAAAAATGCGAGAGCAC 222892 Query 475482 TAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAA 475541 | | ||| | ||||| || |||||||| || ||| | | || || || | ||| Sbjct 222893 TTCGTCGTTTGAGAACAGCGTGTGAACGCGCCAAGAGGACACTCTCCAGCTCTGCGCAAG 222952 Query 475542 CTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGG 475601 | | ||||||| | || |||| |||||||| || | || || || | | Sbjct 222953 CAATTGTTGAAATCGACAGTCTTCACGAAGGAATCGACTTCCATGGGAAGATCACTCGAG 223012 Query 475602 CTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAG 475661 | ||| ||||| | || |||||||| ||| | ||||| |||| || || || || | Sbjct 223013 CACGATTCGAAGAACTCTGCTCTGATCTGTTTCGGAAAACGCTTGAGCCTGTCGAGCAGG 223072 Query 475662 TTCTCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | | ||| || | ||||| | | | || |||||||||| ||||| || || Sbjct 223073 CCATTCGTGATGCTCGCATCGACAAGAAGGCCA-TCGATGAAATTGTGCTTGTTGGTGGC 223131 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTT--AATGGTAAAAAG 475777 || || ||||| || || | |||| ||| ||| | ||| | ||||| ||| || Sbjct 223132 TCTACTAGAATACCGAAGGTGC-AGAA--GCTACTCAGCGAATTCTTCAATGGCAAACAG 223188 Query 475778 TTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCT 475837 | ||| | ||||||||||| || ||||| || || || || || ||||| || Sbjct 223189 CTGAATCTTTCGATCAATCCTGATGAGGCAGTTGCTTACGGTGCCGCAGTTCAAGCTGCC 223248 Query 475838 ATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCA 475897 | | ||| ||| ||| | || | || || | ||||| || |||||| Sbjct 223249 GTGCTGAGCGGTGTTCAAGATAAGACCGTGAAGGACGTTCTATTGGTTGATGTCACTCCA 223308 Query 475898 CTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACT 475957 || ||||| || ||||||| | ||| || || ||||| || | | || || |||||| Sbjct 223309 CTATCATTGGGAATTGAAACGGCTGGTGGTATGATGACAAAATTAGTGGAAAGGAATACT 223368 Query 475958 CCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTA 476017 | ||| ||| ||| | || || || |||| ||||| || || || | || Sbjct 223369 CGTATTCCAACTAAAGCAACACAAACGTTCACCACCTATTCCGACAACCAGCCTGGCGTC 223428 Query 476018 ACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACT 476077 | ||| ||| | ||||| || ||| | | || || || |||||| | |||| Sbjct 223429 AGCATTCAAGTTTTTGAGGGCGAACGTGCGATGACGAAGGACAATAACCTGTTGGGAAAG 223488 Query 476078 TTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 || | || || ||||| || || || | ||||||||||| ||||| || ||||| Sbjct 223489 TTCGACCTCAGTGGGATTCCACCCGCACCACGTGGAGTTCCTCAGATTGAGGTCACTTTC 223548 Query 476138 GATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 ||| | || ||||| || ||| | |||| | ||| ||||| || || Sbjct 223549 GATCTGGACGCAAACGGCATTATGCATGTGAGTGCATGTGACAAGTC 223595 >seq293 Length=269193 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 480628 GCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCT 480687 |||| || || || ||||||||||| ||||| || || |||||||||||||| || |||| Sbjct 96954 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 97013 Query 480688 TTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 | ||||||| |||||| ||||| | | || || || || |||||||||| Sbjct 97014 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 97073 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | | || || |||||||| || Sbjct 97074 TCAACGTTTTCACGAAAATCTG 97095 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| || || || |||||||| ||||| || || || ||||| |||||||| Sbjct 95924 CTTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTT 95983 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 || ||| ||| || ||||| | || | | || | || || || |||||||||| Sbjct 95984 CGCCTTCACATTTTCGATTGTATCGGATGCTTCTACTT-CGAGTGTGATGGTTTTACCGG 96042 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| ||||| || || Sbjct 96043 TGAGGGTCTTGACGAAGATCTG 96064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267622081662224