Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq293 91.5 3e-13 >seq293 Length=269193 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| || ||||| | | || ||||| ||||| |||||||| || || || || ||| Sbjct 96956 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 97015 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| || | ||| |||| ||| || || ||||| ||||||||||| || Sbjct 97016 GCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGGTC 97075 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 || ||||| | || |||||||| Sbjct 97076 AACGTTTTCACGAAAATCTGCAT 97098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||| ||||||| | ||| |||||||| ||||| ||||||||||| || ||||| Sbjct 94593 TACCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTG 94652 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || || || |||| || |||| ||| ||||| || || || || || || || | Sbjct 94653 CCTTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCA 94712 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | || |||||||| Sbjct 94713 ACGTTTTCACGAAGATCTGCAT 94734 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| | || ||||||||| || || || || ||||| || || || || Sbjct 95925 TTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTTC 95984 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||| || | ||||||||| || || ||||||||||| || Sbjct 95985 GCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGTG 96044 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | || || | || |||||||| Sbjct 96045 AGGGTCTTGACGAAGATCTGCAT 96067 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 |||||||||||| | | ||| ||||||||||| || || || || ||||| || ||| Sbjct 95012 ACCAGCAAAGATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGC 95071 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| || | ||| |||| || || || || || ||||||||||| ||||| Sbjct 95072 CTTCACATTCTCGATTGTATCGGACGCCTCCACCTCGAGTGTGATGGTTTTACCCGTTAA 95131 Query 192516 TGTTTTAATAAATATCTGCAT 192536 || || | || || ||||| Sbjct 95132 CGTCTTCACGAAAATTTGCAT 95152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984316173913800