Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq55 120 4e-21 seq875 109 7e-18 seq28 96.9 4e-14 seq37 91.5 2e-12 >seq55 Length=718927 Score = 120 bits (132), Expect = 4e-21 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| || || ||||| || ||||| || || | || Sbjct 76082 GCTTGGCGAGTTCTCCTGGAAGGATGAGACGAACGGCAGTTTGGATTTCACGAGAAGAGA 76141 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||||||| | ||||| | |||| || |||| | Sbjct 76142 TAGTTGAGCGCTTGTTGTAATGCGCCAGACGACTTGCCTCAGCTGCGATACGTTCGAAAA 76201 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| |||||||| ||||||| |||||||| ||| ||| ||||| || || | Sbjct 76202 CGTCGTTCACAAACGAATTCATGATCGACATCGCTTTGGAGGATATGCCGGTATCCGGAT 76261 Query 1254523 GCACCTGCTTGAGCAC 1254538 |||||||||||||||| Sbjct 76262 GCACCTGCTTGAGCAC 76277 >seq875 Length=50642 Score = 109 bits (120), Expect = 7e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| || || || || || ||||||||||| || | | Sbjct 6570 GCTTGGCGAGCTCTCCTGGCAGAATGAGACGAACCGCAGTCTGGATCTCACGAGAAGAAA 6629 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||| || || | ||||| ||||| | || || | | ||||||| |||| | Sbjct 6630 TCGTTGAGCGTTTATTGTACTGCGCTAGACGACTTGCTTCAGCGGCGATGCGCTCGAAAA 6689 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||| ||||||| ||||||| ||| ||| ||||| ||| || | Sbjct 6690 CGTCGTTCACGAACGAATTCATGATTGACATCGCCTTCGAGGATATGCCGGTGTCAGGAT 6749 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||||||||||| ||| | | | ||||||||| Sbjct 6750 GCACCTGCTTGAGCACACGGTAAACGTATACCGAGTACGA 6789 >seq28 Length=1018399 Score = 96.9 bits (106), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||| || || ||||| |||||||| || || | || Sbjct 890878 GCTTGGCGAGCTCTCCCGGAAGGATGAGACGAACGGCAGTCTGGATTTCACGGGAAGAGA 890937 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||| ||||| | || || | |||| |||||| |||| || |||| | Sbjct 890938 TCGTCGAGCGTTTGTTGTAATGTGCTATGCGGCTCGCCTCGACAGCGATACGCTCGAAAA 890997 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||| ||||||| |||||||| || ||| ||||| || || | Sbjct 890998 CGTCGTTCACGAACGAATTCATGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGAT 891057 Query 1254523 GCACCTGCTTGAGCAC 1254538 |||||||||||||||| Sbjct 891058 GCACCTGCTTGAGCAC 891073 >seq37 Length=910371 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||||||||||| || ||| |||||| | ||||| | ||||||||| Sbjct 1231 GCAGCGAATTACCTCGACATAAAAGGTCTCCTCGATGTGACATGCAAAACGGTGGCCAAC 1290 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||||||||| || ||||| || || | ||| ||||| ||||| Sbjct 1291 ATGATCAAGGGCAAGTCTCCGGAGGAAATTCGAAGGACGTTTAATATCAA 1340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106073343897196