Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq293 109 5e-19 seq350 105 6e-18 seq139 102 7e-17 seq10797 100 3e-16 >seq293 Length=269193 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||||||||| || || |||||||||||||| || Sbjct 96067 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCC 96008 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || || ||||| || |||||||| || || ||||| |||||| Sbjct 96007 GATACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAA 95948 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || | |||||||| || || Sbjct 95947 CAGCGACTCATCTTTGCTGGTAA 95925 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | |||||| | ||||||||||| || || ||||| || ||||| | Sbjct 97099 GATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTC 97040 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| |||||||| ||||| |||||||| || || ||||| Sbjct 97039 GGATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 96980 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 |||||| | ||||| ||||| || Sbjct 96979 GCAACGTCTTATCTTCGCCGGTAA 96956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||| | ||||| || || || || |||||||| ||||| | Sbjct 94734 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACACTCGAAGTGGAAGCGTCT 94675 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||| ||||| || |||||||| |||||||| ||||| Sbjct 94674 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 94615 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||| || || Sbjct 94614 CAGCGCCTAATCTTCGCTGG 94595 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| |||| || || || ||||| || || || || || || Sbjct 95683 ATGCAGATCTTTGTGAAAACTTTAACAGGCAAGACCATTACCCTGGAGGTCGAGGCATCC 95624 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | |||||||| || || || || || || || ||||| Sbjct 95623 GACACGATCGAGAACGTTAAGGC-GAAGATCCAGGATAAGGAGGGCATTCCGCCAGATCA 95565 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 |||||||| |||||||| || Sbjct 95564 GCAACGTTTAATCTTTGCTGG 95544 >seq350 Length=232170 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| || ||||| ||||||||||| || || || |||||||| || || | Sbjct 123671 GATGCAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCTTC 123612 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || |||||| || ||||| || ||||| |||||||| || Sbjct 123611 GGATACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCA 123552 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || ||| ||||||| ||||| Sbjct 123551 GCAGCGTCTGATCTTCGCCGG 123531 >seq139 Length=456087 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||||||||||| || || ||||| |||||||| || | | Sbjct 401181 GATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATC 401122 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || || ||||| ||||| ||||| || | |||||| || Sbjct 401121 GGACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCA 401062 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| ||| ||||||| || || Sbjct 401061 ACAGCGTCTGATCTTCGCAGG 401041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||| |||||| ||||| | || ||||| || || || || || || || || || || | Sbjct 410289 TACCATGCAGCTCTTTGTCAAGACGCTTACGGGGAAGACGATCACCCTTGAGGTCGAGCC 410230 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 ||||||| | |||| || ||| ||||| || ||||| || || || || ||||| Sbjct 410229 TTCCGACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGA 410170 Query 24820 TCAACAACGTTTGATCTTTGCCGG 24843 || |||||| | ||||||||||| Sbjct 410169 CCAGCAACGTCTCATCTTTGCCGG 410146 >seq10797 Length=241 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||||||||||| || || ||||| |||||||| || | | Sbjct 1 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || ||||| ||||| ||||| || || ||||| ||| Sbjct 61 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 120 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| ||||||| || || Sbjct 121 CAGCGTCTGATCTTCGCAGG 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449824559124640