Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq55 152 8e-31 seq875 147 3e-29 seq28 143 4e-28 seq119 122 1e-21 seq5109 118 2e-20 seq37 91.5 2e-12 >seq55 Length=718927 Score = 152 bits (168), Expect = 8e-31 Identities = 188/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| |||||||| ||||| || || || ||| |||| ||||| || | | | Sbjct 76045 TATTTGGTGACAGCCTTGGTTCCCTCGGATACCGCATGCTTGGCGAGTTCTCCTGGAAGG 76104 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || || || ||||| || ||||| || || | ||| || ||||||||| || Sbjct 76105 ATGAGACGAACGGCAGTTTGGATTTCACGAGAAGAGATAGTTGAGCGCTTGTTGTAATGC 76164 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || | ||||| | |||| || |||| | |||||| |||||||| |||||| Sbjct 76165 GCCAGACGACTTGCCTCAGCTGCGATACGTTCGAAAACGTCGTTCACAAACGAATTCATG 76224 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 |||||||||| |||| ||| ||||| || || ||||||||||||||||| || Sbjct 76225 ATCGACATCGCTTTGGAGGATATGCCGGTATCCGGATGCACCTGCTTGAGCACACGATAG 76284 Query 1485712 ACAAAGGACGAGTACGA 1485728 ||| | ||||||||| Sbjct 76285 ACATATACCGAGTACGA 76301 >seq875 Length=50642 Score = 147 bits (162), Expect = 3e-29 Identities = 189/258 (73%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||||||||| || |||||||| || || ||| |||| || || || ||| Sbjct 6533 TACTTGGTGACGGCCTTAGTCCCCTCTGATACCGCATGCTTGGCGAGCTCTCCTGGCAGA 6592 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-G 1485590 || || || || || ||||||||||| || | ||||| ||| || || || | | Sbjct 6593 ATGAGACGAACCGCAGTCTGGATCTCACGAGAAGAAATCGTTGAGCGTTTATT-GTACTG 6651 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||| || || | || || | | ||||||| |||| | |||||| || ||||| ||||| Sbjct 6652 CGCTAGACGACTTGCTTCAGCGGCGATGCGCTCGAAAACGTCGTTCACGAACGAATTCAT 6711 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||||||| || ||| ||||| ||| || ||||||||||||||||| ||| Sbjct 6712 GATTGACATCGCCTTCGAGGATATGCCGGTGTCAGGATGCACCTGCTTGAGCACACGGTA 6771 Query 1485711 AACAAAGGACGAGTACGA 1485728 ||| | ||||||||| Sbjct 6772 AACGTATACCGAGTACGA 6789 >seq28 Length=1018399 Score = 143 bits (158), Expect = 4e-28 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||| ||||| || || || ||| |||| || || || | | Sbjct 890839 TGTATTTGGTAACAGCCTTGGTTCCCTCGGATACCGCATGCTTGGCGAGCTCTCCCGGAA 890898 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || ||||| |||||||| || |||| |||||| ||| ||||| Sbjct 890899 GGATGAGACGAACGGCAGTCTGGATTTCACGGGAAGAGATCGTCGAGCGTTTGTTGTAAT 890958 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||||| |||||| |||| || |||| | |||||| || ||||| |||| Sbjct 890959 GTGCTATGCGGCTCGCCTCGACAGCGATACGCTCGAAAACGTCGTTCACGAACGAATTCA 891018 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| ||| ||| ||||| || || ||||||||||||||||| || Sbjct 891019 TGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGATGCACCTGCTTGAGCACACGGT 891078 Query 1485710 AAAC 1485713 |||| Sbjct 891079 AAAC 891082 >seq119 Length=515420 Score = 122 bits (134), Expect = 1e-21 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || || |||||| | ||||| || || ||| Sbjct 263338 TGTACTTGGTGACGGCCTTTGTGCCCTCAGATACTGCGTGCTTAGCCAGCTCTCCAGGCA 263279 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || |||||||| || || | |||||| || ||||| | Sbjct 263278 GGATAAGACGAACCGCAGTCTGGATTTCACGAGATGAGATCGTCGACCGTTTGTTGTAGT 263219 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| | || || | | || || |||| | |||||| ||||| || |||| Sbjct 263218 GTGCAAGGCGACTCGCTTCAGCAGCAATCCGTTCGAAGACGTCGTTCACAAATGAATTCA 263159 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || || || ||| ||||| ||||||||||| | ||| Sbjct 263158 TGATCGACATTGCCTTCGAAGATATTCCCGTATCGGGATGCACCTGCTTCAACAC 263104 Score = 113 bits (124), Expect = 7e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || || || ||| | ||||| || || ||| Sbjct 270625 TGTACTTGGTGACGGCCTTTGTGCCCTCAGATACTGCATGCTTAGCCAGCTCTCCAGGCA 270684 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || || | |||||| || ||||| | Sbjct 270685 GAATAAGACGAACCGCAGTCTGGATTTCACGAGATGAGATCGTCGACCGTTTGTTGTAGT 270744 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| | || || | | || || |||| | |||||| ||||| || |||| Sbjct 270745 GTGCAAGGCGACTCGCTTCAGCAGCAATACGTTCGAAGACGTCGTTCACAAATGAATTCA 270804 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || || || ||| ||||| ||||||||||| | ||| Sbjct 270805 TGATCGACATTGCCTTCGAAGATATTCCCGTATCGGGATGCACCTGCTTCAACAC 270859 >seq5109 Length=512 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || || |||||| | ||||| || || ||| Sbjct 61 TGTACTTGGTGACGGCCTTTGTGCCCTCAGATACTGCGTGCTTAGCCAGCTCTCCAGGCA 120 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || || | |||||| || ||||| | Sbjct 121 GAATAAGACGAACCGCAGTCTGGATTTCACGAGATGAGATCGTCGACCGTTTGTTGTAGT 180 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| | || || | | || || |||| | |||||| ||||| || |||| Sbjct 181 GGGCAAGGCGACTCGCTTCAGCAGCAATCCGTTCGAAGACGTCGTTCACAAATGAATTCA 240 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || || || ||| ||||| ||||||||||| | ||| Sbjct 241 TGATCGACATTGCCTTCGAAGATATTCCCGTATCGGGATGCACCTGCTTCAACAC 295 >seq37 Length=910371 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || || ||||||||||| || ||||||||| || ||||| || ||||||||| Sbjct 1231 GCAGCGAATTACCTCGACATAAAAGGTCTCCTCGATGTGACATGCAAAACGGTGGCCAAC 1290 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAA 2035756 | |||||||||||||| || ||||| || || | ||| ||||| ||||| Sbjct 1291 ATGATCAAGGGCAAGTCTCCGGAGGAAATTCGAAGGACGTTTAATATCAA 1340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914864807201732