Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq340 167 2e-35 seq177 165 6e-35 seq306 107 1e-17 >seq340 Length=240320 Score = 167 bits (184), Expect = 2e-35 Identities = 931/1469 (63%), Gaps = 31/1469 (2%) Strand=Plus/Minus Query 281410 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 281469 |||||| || ||| ||| |||||| | ||| || || || |||| ||| || ||||| Sbjct 223599 TGTTGACTTGTCACATGCACTCACATGCATAATGCCGTTTGCGTCCAGATCGAAAGTGAC 223540 Query 281470 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 281529 ||||| ||||| || || | | || ||||| ||||| | | || |||||| Sbjct 223539 CTCAATCTGAGGAACTCCACGTGGTGCGGGTGGAATCCCACTGAGGTCGAACTTTCCCAA 223480 Query 281530 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 281589 ||||| || || || | ||||| ||||| |||| ||| || | || ||| Sbjct 223479 CAGGTTATTGTCCTTCGTCATCGCACGTTCGCCCTCAAAAACTTGAATGCTGACGCCAGG 223420 Query 281590 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 281649 || || || ||||| || || || | | | |||| ||||| || || || Sbjct 223419 CTGGTTGTCGGAATAGGTGGTGAACGTTTGTGTTGCTTTAGTTGGAATACGAGTATTCCT 223360 Query 281650 ATCAA-TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 281708 || | |||| ||| |||| ||||||||||| ||||| | || | || || ||||||| Sbjct 223359 TTCCACTAATTTTG-TCATCATACCACCAGCCGTTTCAATTCCCAATGATAGTGGAGTGA 223301 Query 281709 CATCAACTAGGACAATAT-TTTGAAGTTTTTCATCAGTTTGACCAAC---AAGAATAGCT 281764 ||||||| | | || | || | | | || ||| |||| || | || | || Sbjct 223300 CATCAACCAATAGAACGTCCTTCACGGTCTT-ATC---TTGAACACCGCTCAGCACGGCA 223245 Query 281765 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 281824 ||||||| || ||||| || ||||| || ||||||||||| | | ||| || | | Sbjct 223244 GCTTGAACTGCGGCACCGTAAGCAACTGCCTCATCAGGATTGATCGAAAGATTCAGCTGT 223185 Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 281883 || |||||||| || | || || | ||| ||||| || || | || || || || Sbjct 223184 TTGCCATTGAAGAATTCGCTGAGTAGCT-TCTGCACCTTCGGTATTCTAGTAGAGCCACC 223126 Query 281884 AACTAATACAATTTCATGCACCTGTGAT--TTATCCAGTTTTGAATCCAATAAAACTTTT 281941 ||| | |||||||||| | || | || || | | ||| | | | Sbjct 223125 AACAAGCACAATTTCATCGA--TGGCCTTCTTGTCGATGCGAGCATCACGAATGGCCTGC 223068 Query 281942 TCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 282001 || || || ||||| | ||||| || || || |||||||||||| |||| | Sbjct 223067 TCGACAGGCTCAAGCGTTTTCCGAAACAGATCAGAGCAGAGTTCTTCGAATCGTGCTCGA 223008 Query 282002 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGA 282061 || | | ||| | || ||||||||| | | || | ||||| | | ||| Sbjct 223007 GTGATCTTCCCATGGAAGTCGATTCCTTCGTGAAGACTGTCGATTTCAACAATTGCTTGC 222948 Query 282062 GTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT 282121 | || || |||| | || || |||||||| ||||| || | | || | ||| Sbjct 222947 GCAGAGCTGGAGAGTGTCCTCTTGGCGCGTTCACACGCTGTTCTCAAACGACGAAGTGCT 222888 Query 282122 TTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT 282181 | || || ||||| || | || ||| |||| || || || | | Sbjct 222887 CTCGCATTTTTCTTCAAGTCCTTGCCGTAACGTCTTCTGAATTCCTCTGCAAAGTGATTA 222828 Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || | ||| | |||||||||||| || |||| | |||| || | || | | ||| Sbjct 222827 ACCATACGGTCATCAAAATCTTCGCCACCCAGATGCGTATCGCCAGCTGTGGACTTCACT 222768 Query 282242 TGGAA-AAG--TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 | ||| ||| ||| || | | || || || | || || || || ||||||| | Sbjct 222767 TCGAACAAGGATCCCTCGGCGATAGTCAGAATGGAGACGTCGAAAGTCCCTCCACCCAGA 222708 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 ||||| ||||| || ||| |||| | | | || || |||||||| || || | || Sbjct 222707 TCAAATATAAGCACGTTCTTTTCGTCAGATAGCTTCTTGTCAAGACCGTAAGCGAGCGCG 222648 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || |||||||| || || || ||||||| || ||||| ||||| | ||||| Sbjct 222647 GCTGCAGTTGGCTCGTTTATGATTCTCAGGGGCTTCAGACCTGCAATGATGGACGCATCC 222588 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || ||||| || | ||| ||||| ||||| || || || || || || || || | Sbjct 222587 TTCGTGGCCTGGCGTTGACTGTCGTTGAAATAGGCCGGGACTGTGATTACTGCCTCGGCA 222528 Query 282479 ACTTCTTTTCCAATATAAGCGCT-TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537 || | |||| || ||| || ||| || | |||||| || | || |||||| || Sbjct 222527 ACCGGATGGCCAAGAT-AGCTCTCTGCAGTCTCTTTCATCTTGACGAGAACCATTGAAGA 222469 Query 282538 AATTTGTTCTG--GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGT 282595 || | ||| | | ||| | ||| | ||||| || ||| || | ||| Sbjct 222468 GATCTCTTCAGGCGTGAAGA-CCCTTTTCTCGCCTTTGA-ATTCTACCTCGACGGCTGG- 222412 Query 282596 TTATTACCAACATT---AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTT 282652 || ||| || || ||||| || ||||| | |||||| ||| || | Sbjct 222411 --CTTGCCAGTTTTCGGAACCACTTTGAAGGGCCAGTTGCGCATATCCTGTTGCACCTTA 222354 Query 282653 TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTA 282712 |||||| || | || || || | | || || || || || ||||| |||||| Sbjct 222353 GGGTCATCGAACTTCCTGCCGATAAGCCTCTTCGCGTCGAAGATCGTATTCTCAGGATTA 222294 Query 282713 ACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACA 282772 || |||| | || || ||||||||||| ||| |||| || || || || | || Sbjct 222293 CGAGCCACTTGCTCCTTAGCCGCATCTCCAATAAGACGTTCCGTATCGGTGAACGCGACG 222234 Query 282773 TATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGC 282832 | || || ||||| || ||||| ||||| |||||||| || || | ||||| || Sbjct 222233 AAAGAAGGTGTTGTTTTGTTGCCTTGGTCATTGGCAATAATCTCGACGTGGCCATTCTGA 222174 Query 282833 CATACACCTACACAACTAAAAGTTGTTCC 282861 | || || ||||||||| | || || || Sbjct 222173 TAGACGCCGACACAACTATACGTCGTACC 222145 >seq177 Length=409541 Score = 165 bits (182), Expect = 6e-35 Identities = 375/556 (67%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| || | ||||| || || ||||| || || |||| ||| ||| Sbjct 128716 TTCTTGTCAAGACCATAGGCGAGTGCAGCGGCTGTGGGTTCGTTGATGATTCGCAACACA 128657 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | || ||||| | || || || || |||||||| | || ||||||||||||| Sbjct 128656 TTCAAGCCGGCAATCGTGCCAGCGTCCTTCGTGGCTTGACGCTGGCTATCGTTAAAATAT 128597 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509 || || || || || ||||| ||| ||| || || | ||||| || |||| Sbjct 128596 GCCGGCACTGTGATGACGGCTTCTCGCACTGGACGACCGATGAA--CGCTTCGGCGGTTT 128539 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG--AATATTGCTTGGATTC 282567 ||||||||| | |||||| ||||| || | || |||| || | | || ||| Sbjct 128538 CTTTCATTTTCACAAGAATCATCGATGAGATCTCCTCGGGAGTGAAAACTCGTTT--TTC 128481 Query 282568 AT-TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC---TTTAAATG 282623 | ||||| | |||| || | ||||| ||| | || ||| ||| |||| Sbjct 128480 ACCTTTGAACTCC-ACTTGAACAGCCGGTTTC---CCACCTTTGGAAACGATTTTGAATG 128425 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 282683 |||||| ||||||| || || | |||| | | | | || || | || | Sbjct 128424 GCCAATGACGCATATCTTCCTGTACTTTAGGGTCGTCCATTTTGCGGCCTATGATGCGCT 128365 Query 282684 TTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAA 282743 ||||||| || || ||||| ||||| || |||||| | || | || || | Sbjct 128364 TTGCATCGAATATTGTATTTTCCGGATTTCGAGCCACTTGATCGTAAGCCGGATTACCGA 128305 Query 282744 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 282803 ||| | | || | || ||||||| ||||| || || ||||| ||| |||||||||| Sbjct 128304 TCAAACGCTCGCTTTCAGTAAATGCCACATAAGACGGTGTTGTCTTATTGCCTTGATCAT 128245 Query 282804 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTA 282863 | ||||| ||||| || ||||||| ||| |||| || |||||||| |||| || |||| Sbjct 128244 TGGCAATTATTTCCACCTTACCATATTGGAATACTCCAACACAACTGTAAGTAGTACCTA 128185 Query 282864 AATCAATACCAATAGC 282879 | || || |||| ||| Sbjct 128184 AGTCGATTCCAACAGC 128169 >seq306 Length=263620 Score = 107 bits (118), Expect = 1e-17 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 |||| || |||||||| ||||||||| ||| ||| | | ||| || |||| | || Sbjct 225687 TAACCTTGAATGGCCAGACTTTCATATCCTCTTGTACAGTCTTGTCGTTGTAATCGCGAC 225746 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 | || | ||||| ||||| |||| ||||| || || | | ||| | |||| Sbjct 225747 CGATAAGCCGTTTGGCATCGAAAACCGTATTCTCAGGGTTGATCGTGAGTTGGTTCTTGG 225806 Query 282732 CTGCATCTCCAATCAGATGTTC---TGTCTC---TGTAAATGAAACATATGATGGAGTTG 282785 | ||||| || |||||| |||| ||| || ||| || | |||||||||||| || Sbjct 225807 CCGCATCACCGATCAGACGTTCACCTGTATCGCTTGTGAACGCAACATATGATGGTGTGA 225866 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 | |||||||| || || || ||||| ||||| || ||||||| | ||||| |||| Sbjct 225867 TACGATTACCCTGGTCGTTTGCAATGATTTCCACACGTCCATTTTTGAACACACCCACAC 225926 Query 282846 AACT 282849 |||| Sbjct 225927 AACT 225930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739992744087288