Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq293 95.1 1e-14 seq3674 87.8 2e-12 seq139 87.8 2e-12 >seq293 Length=269193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || || ||||| || || ||||| ||||||||||| ||||| Sbjct 96954 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 97013 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | |||| ||| || | | ||||| |||| |||| |||||| |||| Sbjct 97014 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 97073 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||||||||| Sbjct 97074 TCAACGTTTTCACGAAAATCTGCAT 97098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 |||||||||||||| || || ||||| || |||||||| |||||| ||| | | | Sbjct 95022 ATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTC 95081 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || |||| | |||||| |||| |||| |||||| || || | || || ||| Sbjct 95082 TCGATTGTATCGGACGCCTCCACCTCGAGTGTGATGGTTTTACCCGTTAACGTCTTCACG 95141 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 95142 AAAATTTGCAT 95152 >seq3674 Length=682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||| || ||||| ||||||||||||||||| ||||| | Sbjct 296 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 355 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| |||| || | || | |||||| || || | || | |||||||| || || Sbjct 356 TTGACATGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAGC 415 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| ||||| || |||||| Sbjct 416 GTTTTGACGAAGATTTGCATG 436 >seq139 Length=456087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||| || ||||| ||||||||||||||||| ||||| | Sbjct 278633 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 278574 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| |||| || | || | |||||| || || | || | |||||||| || || Sbjct 278573 TTGACATGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAGC 278514 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| ||||| || |||||| Sbjct 278513 GTTTTGACGAAGATTTGCATG 278493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||| || ||||| ||||||||||||||||| ||||| | Sbjct 408665 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 408724 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| |||| || | || | |||||| || || | || | |||||||| || || Sbjct 408725 TTGACATGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAGC 408784 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| ||||| || |||||| Sbjct 408785 GTTTTGACGAAGATTTGCATG 408805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483342316633120