Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq55 131 2e-24 seq28 105 1e-16 seq875 98.7 1e-14 seq119 98.7 1e-14 seq5109 93.3 6e-13 >seq55 Length=718927 Score = 131 bits (144), Expect = 2e-24 Identities = 179/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| | | |||| ||||||||||||||||| || |||| | | Sbjct 76301 TCGTACTCGGTATATGTCTATCGTGTGCTCAAGCAGGTGCATCCGGATACCG---GCATA 76245 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| || | |||||||||||||| |||||||| |||||| | |||| || ||| Sbjct 76244 TCCTCCAA--AG-CGATGTCGATCATGAATTCGTTTGTGAACGACGTTTTCGAACGTATC 76188 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||| |||| ||||||| | |||||||||| || ||| | || || Sbjct 76187 GCAGCTGAGGCAAGTCGTCTGGCGCATTACAACAAGCGCTCAACTATCTCTTCTCGTGAA 76128 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| || ||||| || || ||| | | || ||||| |||| ||| || || |||||| Sbjct 76127 ATCCAAACTGCCGTTCGTCTCATCCTTCCAGGAGAACTCGCCAAGCATGCGGTATCCGAG 76068 Query 725136 GGCACCA 725142 || |||| Sbjct 76067 GGAACCA 76061 >seq28 Length=1018399 Score = 105 bits (116), Expect = 1e-16 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||||||||||||||| || |||| | |||||| || || | ||||||||| Sbjct 891073 GTGCTCAAGCAGGTGCATCCGGATACCG---GCATATCCTCGAA--AG-CGATGTCGATC 891020 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| ||||| || |||||| | |||| || |||| |||||| | ||| | || Sbjct 891019 ATGAATTCGTTCGTGAACGACGTTTTCGAGCGTATCGCTGTCGAGGCGAGCCGCATAGCA 890960 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | | |||||| ||| |||||| | || || |||||||| ||||| || || ||| Sbjct 890959 CATTACAACAAACGCTCGACGATCTCTTCCCGTGAAATCCAGACTGCCGTTCGTCTCATC 890900 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || || || |||| ||| || || |||||||| |||| Sbjct 890899 CTTCCGGGAGAGCTCGCCAAGCATGCGGTATCCGAGGGAACCA 890857 >seq875 Length=50642 Score = 98.7 bits (108), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||||||||||||||| || |||| | |||||| || | | ||||| ||| Sbjct 6765 GTGCTCAAGCAGGTGCATCCTGACACCG---GCATATCCTCGAA---GGCGATGTCAATC 6712 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| ||||| || |||||| | |||| ||||||| | | || || |||| || ||| Sbjct 6711 ATGAATTCGTTCGTGAACGACGTTTTCGAGCGCATCGCCGCTGAAGCAAGTCGTCTAGCG 6652 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | | ||| || ||| ||||| | || ||||||||||| || || || || || Sbjct 6651 CAGTACAATAAACGCTCAACGATTTCTTCTCGTGAGATCCAGACTGCGGTTCGTCTCATT 6592 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || || |||| ||| || || || ||||| || Sbjct 6591 CTGCCAGGAGAGCTCGCCAAGCATGCGGTATCAGAGGGGAC 6551 >seq119 Length=515420 Score = 98.7 bits (108), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||| | ||||||||||| ||| || || || ||| || || | | ||||||||| Sbjct 263104 GTGTTGAAGCAGGTGCATCCC-GATACG--GGAATATCTTCGAA---GGCAATGTCGATC 263157 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || ||||| |||||| | |||| || || | | || || ||||||| || Sbjct 263158 ATGAATTCATTTGTGAACGACGTCTTCGAACGGATTGCTGCTGAAGCGAGTCGCCTTGCA 263217 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||| || |||||| | || || |||||||| || || || || ||| Sbjct 263218 CACTACAACAAACGGTCGACGATCTCATCTCGTGAAATCCAGACTGCGGTTCGTCTTATC 263277 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || ||||| | |||||| || || |||||||| Sbjct 263278 CTGCCTGGAGAGCTGGCTAAGCACGCAGTATCTGAGGGCAC 263318 Score = 89.7 bits (98), Expect = 7e-12 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||| | ||||||||||| ||| || || || ||| || || | | ||||||||| Sbjct 270859 GTGTTGAAGCAGGTGCATCCC-GATACG--GGAATATCTTCGAA---GGCAATGTCGATC 270806 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || ||||| |||||| | |||| || || | | || || ||||||| || Sbjct 270805 ATGAATTCATTTGTGAACGACGTCTTCGAACGTATTGCTGCTGAAGCGAGTCGCCTTGCA 270746 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||| || |||||| | || || |||||||| || || || || || Sbjct 270745 CACTACAACAAACGGTCGACGATCTCATCTCGTGAAATCCAGACTGCGGTTCGTCTTATT 270686 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || ||||| | ||| || || || |||||||| Sbjct 270685 CTGCCTGGAGAGCTGGCTAAGCATGCAGTATCTGAGGGCAC 270645 >seq5109 Length=512 Score = 93.3 bits (102), Expect = 6e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||| | ||||||||||| ||| || || || ||| || || | | ||||||||| Sbjct 295 GTGTTGAAGCAGGTGCATCCC-GATACG--GGAATATCTTCGAA---GGCAATGTCGATC 242 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || ||||| |||||| | |||| || || | | || || ||||||| || Sbjct 241 ATGAATTCATTTGTGAACGACGTCTTCGAACGGATTGCTGCTGAAGCGAGTCGCCTTGCC 182 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||| || |||||| | || || |||||||| || || || || || Sbjct 181 CACTACAACAAACGGTCGACGATCTCATCTCGTGAAATCCAGACTGCGGTTCGTCTTATT 122 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || || ||||| | |||||| || || |||||||| Sbjct 121 CTGCCTGGAGAGCTGGCTAAGCACGCAGTATCTGAGGGCAC 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176558483528056