Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq293 134 1e-26 >seq293 Length=269193 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||||||| || ||||| ||||| || ||||| ||||| Sbjct 93953 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 94012 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || |||||||| ||||| || | |||||||||||||||||| Sbjct 94013 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 94072 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||| || || | || ||||||| ||||| Sbjct 94073 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACC 94132 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| || || || || | || || |||||||||||||| Sbjct 94133 TCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 94179 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || || | ||| |||||||| || || || ||||| || || || || || Sbjct 96956 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 97015 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | || || |||| |||||| |||||||| |||||||||||||| Sbjct 97016 GCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGGTC 97075 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| ||||| Sbjct 97076 AACGTTTTCACGAAAATCTGCAT 97098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 134589 CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT 134648 ||||||||||| || ||||| |||||||| || || |||||| ||||| || | Sbjct 94610 CGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCCTTGACGTTTTCGATA 94669 Query 134649 GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATT 134708 ||||| |||| |||||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 94670 GTGTCAGACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCAACGTTTTCACGAAGATC 94729 Query 134709 TGCAT 134713 ||||| Sbjct 94730 TGCAT 94734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| || | ||||||||||| || || || || || || ||||| || || Sbjct 95013 CCAGCAAAGATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCC 95072 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| ||||||| ||||| ||||| || ||||||||||| ||||| Sbjct 95073 TTCACATTCTCGATTGTATCGGACGCCTCCACCTCGAGTGTGATGGTTTTACCCGTTAAC 95132 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||||||||| Sbjct 95133 GTCTTCACGAAAATTTGCAT 95152 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| || ||||| |||||||| ||||| ||||| || || || || || || Sbjct 95544 CCAGCAAAGATTAAACGTTGCTGATCTGGCGGAATGCCCTCCTTATCCTGGATCTTCGCC 95603 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||||| | || || || || |||||||| || || |||||| Sbjct 95604 TTAACGTTCTCGATCGTGTCGGATGCCTCGACCTCCAGGGTAATGGTCTTGCCTGTTAAA 95663 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 95664 GTTTTCACAAAGATCTGCAT 95683 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | ||||| ||||| || || ||||| ||||| || ||||| || Sbjct 95925 TTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTTC 95984 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||| ||||| | ||| || ||||| || |||||||||||||| Sbjct 95985 GCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGTG 96044 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| Sbjct 96045 AGGGTCTTGACGAAGATCTGCAT 96067 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 134589 CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT 134648 ||||||||||| || || || ||||| || ||||| || || ||||| || | | Sbjct 96439 CGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATT 96498 Query 134649 GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATT 134708 ||||| |||| |||||| || ||||| || ||||| || || || || || || || ||| Sbjct 96499 GTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAACGTCTTCACAAATATT 96558 Query 134709 TGCAT 134713 ||||| Sbjct 96559 TGCAT 96563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505316348569760