Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq293 161 1e-34 seq350 129 7e-25 seq139 123 3e-23 seq10797 120 3e-22 seq700 98.7 1e-15 >seq293 Length=269193 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||||| || |||||||| |||||| | ||||| ||| | Sbjct 94179 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 94120 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||| || || ||||| || |||||||| || || || || ||| Sbjct 94119 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 94060 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || || ||||| ||||| | || ||||| | |||||||| Sbjct 94059 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 94000 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || | ||||||||||| || Sbjct 93999 ATCCAGAAGGAGTCCACTCTCCACCTCGTGCTTCGTCTTCGCGGAGG 93953 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| || || || || || || || || || Sbjct 96067 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCC 96008 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| ||||||| || ||||||||||| ||||| || ||||| || || Sbjct 96007 GATACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAA 95948 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || |||||||||||| Sbjct 95947 CAGCGACTCATCTTTGCTGGTAAG 95924 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || ||| | ||||| || || || ||||| ||||| || | Sbjct 97098 ATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTCG 97039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 97038 GATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 96979 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 || ||||| || || || ||||||| Sbjct 96978 CAACGTCTTATCTTCGCCGGTAAGC 96954 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||| | || || || || || || || ||||| ||| | Sbjct 95152 ATGCAAATTTTCGTGAAGACGTTAACGGGTAAAACCATCACACTCGAGGTGGAGGCGTCC 95093 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||||||||| || || ||||||||||| || || || || ||| Sbjct 95092 GATACAATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAG 95033 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||||||| Sbjct 95032 CAGCGGCTCATCTTTGCTGGT 95012 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/150 (74%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 27400 ACTATAA---TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||||| |||||||||| || || || ||||| |||||||| || ||||| || || Sbjct 97969 ACTATAAGCATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTG 97910 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| | |||| |||| || | ||||| || || |||||||| ||||| || || Sbjct 97909 GAGGCGTCAGATACAATTGAGAACGTCAAGGCCAAGATACAGGACAAAGAGGGCATCCCG 97850 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| || ||||| || || || ||| Sbjct 97849 CCTGACCAACAACGTCTCATCTTCGCCGGT 97820 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || ||| | ||||||||||| || || || || || || | | Sbjct 94734 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACACTCGAAGTGGAAGCGTCT 94675 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| ||||| ||||| || || || || ||||| || ||| Sbjct 94674 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 94615 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| ||||| || ||||||| Sbjct 94614 CAGCGCCTAATCTTCGCTGGTA 94593 >seq350 Length=232170 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||| || || ||||| ||||| || || || || || ||| | Sbjct 123670 ATGCAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCTTCG 123611 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| || |||||||||||||||||||||||||| |||||| Sbjct 123610 GATACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCAG 123551 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| || || || ||| || Sbjct 123550 CAGCGTCTGATCTTCGCCGGTCAG 123527 >seq139 Length=456087 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||||||||||||||||| ||||| || || || |||||| Sbjct 409785 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 409726 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| ||||| ||||||||||| || || || || ||||| Sbjct 409725 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 409666 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| || || || ||| Sbjct 409665 CAGCGTCTGATCTTCGCAGGT 409645 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||||| ||||||||||| ||||| || || || |||||| Sbjct 401180 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 401121 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| ||||| ||||||||||| || || | ||| ||||| Sbjct 401120 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 401061 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| || || || ||| Sbjct 401060 CAGCGTCTGATCTTCGCAGGT 401040 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||||| || ||||| || || |||||||| ||| | Sbjct 410285 ATGCAGCTCTTTGTCAAGACGCTTACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTCC 410226 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || | || ||||||||||||||||| || || || |||||| Sbjct 410225 GACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 410166 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || ||||| ||| || Sbjct 410165 CAACGTCTCATCTTTGCCGGTTAG 410142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||| ||| |||||||| || ||||||||||| ||| | Sbjct 401752 ATGCAGATTTTTGTCAAGACGATTAGTGGCAAGACGATCACTCTTGAGGTCGAGCCTTCC 401693 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||| ||||| || || || || Sbjct 401692 GACACCATCGAGAACGTCAAGACGAAGATTCAGGACAAAGAGGGTATCCCACCCATTGAG 401633 Query 27526 CAGCGTCTAAT 27536 |||||||| || Sbjct 401632 CAGCGTCTCAT 401622 >seq10797 Length=241 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||||| ||||||||||| ||||| || || || |||||| Sbjct 1 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 60 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| ||||| ||||||||||| || || || || ||||| Sbjct 61 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 120 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| || || || ||| Sbjct 121 CAGCGTCTGATCTTCGCAGGT 141 >seq700 Length=91371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || || || || || |||||||| || | Sbjct 89533 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 89592 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| |||||||||||||| ||||| ||||| || |||||| Sbjct 89593 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 89652 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || || || ||| || Sbjct 89653 CAACGTCTTATATTCGCCGGTTAG 89676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570217810106560