Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10797 104 2e-17 seq293 104 2e-17 seq139 104 2e-17 >seq10797 Length=241 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || ||||||||| | ||||| || |||||||| | || Sbjct 1 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 60 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| || ||||| ||||| || |||||||| ||| Sbjct 61 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 120 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||| | || | ||| || Sbjct 121 CAGCGTCTGATCTTCGCAGG 140 >seq293 Length=269193 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||||||||| | || || || ||||||||| |||| Sbjct 94734 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACACTCGAAGTGGAAGCGTCT 94675 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| |||||| || || |||||||| ||||| || ||||| Sbjct 94674 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 94615 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| |||| | ||| || Sbjct 94614 CAGCGCCTAATCTTCGCTGG 94595 >seq139 Length=456087 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || ||||||||| | ||||| || |||||||| | || Sbjct 409785 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 409726 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| || ||||| ||||| || |||||||| ||| Sbjct 409725 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCCGACCAA 409666 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||| | || | ||| || Sbjct 409665 CAGCGTCTGATCTTCGCAGG 409646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || ||||||||| | ||||| || |||||||| | || Sbjct 401180 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 401121 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| || ||||| ||||| || | ||||| ||| Sbjct 401120 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 401061 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||| | || | ||| || Sbjct 401060 CAGCGTCTGATCTTCGCAGG 401041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434847790997760