Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq293 129 1e-24 seq309 116 9e-21 seq221 116 9e-21 seq26 116 9e-21 seq10797 96.9 8e-15 seq139 96.9 8e-15 seq3674 86.0 1e-11 >seq293 Length=269193 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || |||||||||||||| || || |||| || || || | || ||| Sbjct 93959 CGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTT 94018 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || || || || || ||||| ||||| || || |||||||| ||||| Sbjct 94019 CGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCC 94078 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| ||||| |||||| ||||| || || || | ||||| || || Sbjct 94079 TCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAA 94138 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| |||| || || | ||| | |||||| Sbjct 94139 GTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 94179 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||||||||| || || || || || ||||| |||||||||||||||||||| | Sbjct 96424 CCAGCGAAGATAAGGCGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCC 96483 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||| ||||| || | |||||| || | ||||| || ||||| ||||| Sbjct 96484 TTGACGTTCTCGATTGTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAAC 96543 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | || | |||||| Sbjct 96544 GTCTTCACAAATATTTGCAT 96563 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || || || || || || || ||||| || || ||||| ||| | Sbjct 94595 CCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCC 94654 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||| ||||| || | |||||| || | ||||| |||||||| ||||| Sbjct 94655 TTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCAAC 94714 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | ||||| Sbjct 94715 GTTTTCACGAAGATCTGCAT 94734 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| || ||||||||||| ||||| || || || || || ||||||||||| ||||||| Sbjct 96954 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 97013 Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || ||| ||| || || || || | |||||| || | ||||| || || || | Sbjct 97014 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 97073 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||||| | ||| | ||||| Sbjct 97074 TCAACGTTTTCACGAAAATCTGCAT 97098 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || ||||||||||| ||||| || || || ||||| || ||||| | Sbjct 97821 CCGGCGAAGATGAGACGTTGTTGGTCAGGCGGGATGCCCTCTTTGTCCTGTATCTTGGCC 97880 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || || || || ||||| | ||||| || | |||||||||||||| || | | Sbjct 97881 TTGACGTTCTCAATTGTATCTGACGCCTCCACTTCGAGAGTGATCGTCTTGCCAGTAAGA 97940 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 97941 GTTTTCACGAAGATTTGCAT 97960 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| || || || || || || || ||||| ||||||||||||||||| | Sbjct 95013 CCAGCAAAGATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCC 95072 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||| || || || | ||||| || | ||||| || || ||||| || Sbjct 95073 TTCACATTCTCGATTGTATCGGACGCCTCCACCTCGAGTGTGATGGTTTTACCCGTTAAC 95132 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 95133 GTCTTCACGAAAATTTGCAT 95152 >seq309 Length=262798 Score = 116 bits (128), Expect = 9e-21 Identities = 188/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || || ||||| | |||||| | |||||||| | ||||||| || ||| || | Sbjct 181745 ACTTTGTATTTTTTGTTTGGTTTGTGGTCTGGTATGGTTGGTACTAGGTTGTCTTTGGTG 181804 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || | || ||||| ||| || ||| || | ||| |||| | | || | ||| Sbjct 181805 ATTCGTTTGGAATTGGCTAAACCTGGTCTTC---TTTTG---GGTAGTGGTCAGTTATAC 181858 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || | ||||||| |||||||| || | |||||||| ||| | ||||| || |||| Sbjct 181859 AATTCTGTTATTACTGCGCATGCTATTTTGATGATTTTTTTTATAGTTATACCTACTATG 181918 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || |||||| | | ||||| ||| | || |||||||||||| |||| Sbjct 181919 ATTGGTGGTTTTGGTAATTGAATGTTGCCTTTGATGTTGGGGGCTCCTGATATGAGTTTT 181978 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATT 7709 || | | || ||| |||||||||| || Sbjct 181979 CCTCGTTTAAATAATTTAAGTTTTTGGTT 182007 >seq221 Length=344312 Score = 116 bits (128), Expect = 9e-21 Identities = 188/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || || ||||| | |||||| | |||||||| | ||||||| || ||| || | Sbjct 77719 ACTTTGTATTTTTTGTTTGGTTTGTGGTCTGGTATGGTTGGTACTAGGTTGTCTTTGGTG 77778 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || | || ||||| ||| || ||| || | ||| |||| | | || | ||| Sbjct 77779 ATTCGTTTGGAATTGGCTAAACCTGGTCTTC---TTTTG---GGTAGTGGTCAGTTATAC 77832 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || | ||||||| |||||||| || | |||||||| ||| | ||||| || |||| Sbjct 77833 AATTCTGTTATTACTGCGCATGCTATTTTGATGATTTTTTTTATAGTTATACCTACTATG 77892 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || |||||| | | ||||| ||| | || |||||||||||| |||| Sbjct 77893 ATTGGTGGTTTTGGTAATTGAATGTTGCCTTTGATGTTGGGGGCTCCTGATATGAGTTTT 77952 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATT 7709 || | | || ||| |||||||||| || Sbjct 77953 CCTCGTTTAAATAATTTAAGTTTTTGGTT 77981 >seq26 Length=1086585 Score = 116 bits (128), Expect = 9e-21 Identities = 188/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || || ||||| | |||||| | |||||||| | ||||||| || ||| || | Sbjct 132103 ACTTTGTATTTTTTGTTTGGTTTGTGGTCTGGTATGGTTGGTACTAGGTTGTCTTTGGTG 132162 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || | || ||||| ||| || ||| || | ||| |||| | | || | ||| Sbjct 132163 ATTCGTTTGGAATTGGCTAAACCTGGTCTTC---TTTTG---GGTAGTGGTCAGTTATAC 132216 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || | ||||||| |||||||| || | |||||||| ||| | ||||| || |||| Sbjct 132217 AATTCTGTTATTACTGCGCATGCTATTTTGATGATTTTTTTTATAGTTATACCTACTATG 132276 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || |||||| | | ||||| ||| | || |||||||||||| |||| Sbjct 132277 ATTGGTGGTTTTGGTAATTGAATGTTGCCTTTGATGTTGGGGGCTCCTGATATGAGTTTT 132336 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATT 7709 || | | || ||| |||||||||| || Sbjct 132337 CCTCGTTTAAATAATTTAAGTTTTTGGTT 132365 >seq10797 Length=241 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || ||||||||||| || |||||||||||||| ||||| || | Sbjct 140 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCCTGGATTTTCGCC 81 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||| ||||| || | ||||| || | || ||||||||||| || Sbjct 80 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGT 25 >seq139 Length=456087 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || ||||||||||| || |||||||||||||| ||||| || | Sbjct 409646 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCCTGGATTTTCGCC 409705 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||| ||||| || | ||||| || | || ||||||||||| || Sbjct 409706 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGT 409761 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || ||||||||||| | |||||||||||||| ||||| || | Sbjct 401041 CCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGCC 401100 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||| ||||| || | ||||| || | || ||||||||||| || Sbjct 401101 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGT 401156 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| || ||||| ||||||||||| ||||| |||||||| || ||||| Sbjct 410146 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 410205 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || |||||||||||| || | || || || | ||||||||||| ||||| Sbjct 410206 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGT 410261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || ||||| ||||| |||||||| || |||||||||||||| ||||| | Sbjct 278633 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 278574 Query 225634 TTCACA-GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| | | | || |||| || || || ||||| | ||| ||||| || | Sbjct 278573 TTGACATGCTGC-ACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAG 278515 Query 225693 AGTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 278514 CGTTTTGACGAAGATTTGCAT 278494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || ||||| ||||| |||||||| || |||||||||||||| ||||| | Sbjct 408665 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 408724 Query 225634 TTCACA-GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| | | | || |||| || || || ||||| | ||| ||||| || | Sbjct 408725 TTGACATGCTGC-ACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAG 408783 Query 225693 AGTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 408784 CGTTTTGACGAAGATTTGCAT 408804 >seq3674 Length=682 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || ||||| ||||| |||||||| || |||||||||||||| ||||| | Sbjct 296 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 355 Query 225634 TTCACA-GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| | | | || |||| || || || ||||| | ||| ||||| || | Sbjct 356 TTGACATGCTGC-ACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAG 414 Query 225693 AGTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 415 CGTTTTGACGAAGATTTGCAT 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192332752373672