Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq293 143 6e-29 seq139 122 2e-22 seq350 116 8e-21 seq10797 109 1e-18 seq700 104 5e-17 >seq293 Length=269193 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| || || || | ||| || || |||||||| ||||| | Sbjct 93953 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 94012 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| |||||||| || |||||||| | || || || || ||| Sbjct 94013 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 94072 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| ||||| ||||| ||||| || | |||||||| || || || || || Sbjct 94073 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACC 94132 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| || ||||| || |||| ||||| ||||| || ||||| Sbjct 94133 TCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 94179 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||| | ||||||||||||| ||| || ||||| ||||| || ||||| || Sbjct 97821 CCGGCGAAGATGAGACGTTGTTGGTCAGGCGGGATGCCCTCTTTGTCCTGTATCTTGGCC 97880 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || || || || || || |||||||||||||||||||| || || | | Sbjct 97881 TTGACGTTCTCAATTGTATCTGACGCCTCCACTTCGAGAGTGATCGTCTTGCCAGTAAGA 97940 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 97941 GTTTTCACGAAGATTTGCAT 97960 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | |||||| || || || || || |||||||| |||||||| Sbjct 96956 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 97015 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | || || || ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 97016 GCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGGTC 97075 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| |||||||| Sbjct 97076 AACGTTTTCACGAAAATCTGCAT 97098 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | || || || ||| || ||||||||||||||||||||||| || Sbjct 95013 CCAGCAAAGATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCC 95072 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || || || || || || ||||| ||||| || |||||||| || Sbjct 95073 TTCACATTCTCGATTGTATCGGACGCCTCCACCTCGAGTGTGATGGTTTTACCCGTTAAC 95132 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 95133 GTCTTCACGAAAATTTGCAT 95152 Score = 109 bits (120), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || ||||||||||||||||| || || ||| | ||||| |||||||| ||||| Sbjct 96454 GGAATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATTGTGTCCGACGCTTCC 96513 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||| || || || ||||| ||||| || ||||| ||||| Sbjct 96514 ACCTCCAGAGTGATAGTTTTGCCAGTCAACGTCTTCACAAATATTTGCAT 96563 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || || || ||| || || || || || || ||||| ||||| Sbjct 94595 CCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCC 94654 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||||||||| || ||||| |||||||| ||||| ||||| || ||||| Sbjct 94655 TTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGTGTGATTGTCTTGCCGGTCAAC 94714 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| |||||||| Sbjct 94715 GTTTTCACGAAGATCTGCAT 94734 >seq139 Length=456087 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||| | |||||| ||||| ||| |||||||||||||| || ||||| || Sbjct 410146 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 410205 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| |||| ||||| || || ||||||||||| ||||| | Sbjct 410206 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGTAAGC 410265 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || | |||||| Sbjct 410266 GTCTTGACAAAGAGCTGCAT 410285 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||| |||||||| || ||||| |||||||| ||||| || || Sbjct 409646 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCCTGGATTTTCGCC 409705 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| | || |||||||| || |||||||| || || | Sbjct 409706 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAGC 409765 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || ||||||||||| Sbjct 409766 GTCTTGACAAATATCTGCAT 409785 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||| |||||||| | ||||| |||||||| ||||| || || Sbjct 401041 CCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGCC 401100 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| | || |||||||| || |||||||| || || | Sbjct 401101 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAGC 401160 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || ||||||||||| Sbjct 401161 GTCTTGACAAATATCTGCAT 401180 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || |||||||| ||||| || ||||| | || ||| | ||||| ||||| |||| ||| Sbjct 401643 GGGATACCCTCTTTGTCCTGAATCTTCGTCTTGACGTTCTCGATGGTGTCGGAAGGCTCG 401702 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||||||||| || | | ||||| || || |||||||| Sbjct 401703 ACCTCAAGAGTGATCGTCTTGCCACTAATCGTCTTGACAAAAATCTGCAT 401752 >seq350 Length=232170 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||||| ||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 123531 CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCC 123590 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || ||||| |||||||| ||||||||||| || || |||||||| || | Sbjct 123591 TTCACATTTTCAATAGTATCCGAAGCCTCGACTTCGAGTGTTATTGTCTTACCGGTTAGG 123650 Query 283080 GTCTTAACGAATATCTGCATTTTC 283103 || || | ||| || ||||| ||| Sbjct 123651 GTTTTGATGAAGATTTGCATCTTC 123674 >seq10797 Length=241 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||| |||||||| || ||||| |||||||| ||||| || || Sbjct 140 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCCTGGATTTTCGCC 81 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| | || |||||||| || |||||||| || || | Sbjct 80 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAGC 21 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || ||||||||||| Sbjct 20 GTCTTGACAAATATCTGCAT 1 >seq700 Length=91371 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| || || | |||||| ||||| ||||||||||| ||||| || || || || Sbjct 89672 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 89613 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | ||||| |||||||| ||||| || || || |||||||| || || || | | Sbjct 89612 TTTACATTCTCGATCGTGTCCGACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 89553 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || || ||||| Sbjct 89552 GTCTTCACAAAAATTTGCAT 89533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046565013438152