Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq700 149 2e-30 seq293 131 4e-25 seq139 111 4e-19 seq350 95.1 3e-14 >seq700 Length=91371 Score = 149 bits (164), Expect = 2e-30 Identities = 115/137 (84%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| |||||||||||||||||||||||||| ||||||||| || ||| Sbjct 89536 CAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCGGAC 89595 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || |||||||||||||| || || || || ||||||||| Sbjct 89596 ACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAGCAA 89655 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| |||||||| Sbjct 89656 CGTCTTATATTCGCCGG 89672 >seq293 Length=269193 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || || ||||| ||||| |||||||||||| || || Sbjct 97095 CAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTCGGAT 97036 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct 97035 ACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAA 96976 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||||||||| || Sbjct 96975 CGTCTTATCTTCGCCGGTAA 96956 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||||| || || || |||||||| ||||| ||||| ||||| Sbjct 97957 CAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTGGAGGCGTCAGAT 97898 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 97897 ACAATTGAGAACGTCAAGGCCAAGATACAGGACAAAGAGGGCATCCCGCCTGACCAACAA 97838 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 97837 CGTCTCATCTTCGCCGG 97821 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || ||||| || || || || | |||||||| || || Sbjct 94176 CAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCCGAT 94117 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| |||||||| || || || || || || || || ||||| Sbjct 94116 ACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAGCAG 94057 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || ||||| || || || || | || || | || |||||| || Sbjct 94056 CGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAACATC 93997 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 93996 CAGAAGGAGTCCACTCTCCACCTCGT 93971 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || || || ||||| ||||| |||||| || ||| Sbjct 94731 CAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACACTCGAAGTGGAAGCGTCTGAC 94672 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||| || ||||| |||||||| || ||||| || ||||| Sbjct 94671 ACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAGCAG 94612 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 94611 CGCCTAATCTTCGCTGG 94595 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || ||||| ||||| || ||||||||| || ||| Sbjct 96560 CAAATATTTGTGAAGACGTTGACTGGCAAAACTATCACTCTGGAGGTGGAAGCGTCGGAC 96501 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||| || || || || ||||| Sbjct 96500 ACAATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAG 96441 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 96440 CGCCTTATCTTCGCTGG 96424 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| ||||| ||||| || ||| || || Sbjct 96064 CAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCCGAT 96005 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||||||||| || ||||||||||| || || Sbjct 96004 ACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAACAG 95945 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||| ||||| || || || Sbjct 95944 CGACTCATCTTTGCTGGTAA 95925 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || || ||||| ||||| ||||||||||| || || Sbjct 95149 CAAATTTTCGTGAAGACGTTAACGGGTAAAACCATCACACTCGAGGTGGAGGCGTCCGAT 95090 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| || ||||| || || ||||| || || ||||| Sbjct 95089 ACAATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAG 95030 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 95029 CGGCTCATCTTTGCTGG 95013 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||| | ||||| || || || ||||| ||||| || || ||| Sbjct 95680 CAGATCTTTGTGAAAACTTTAACAGGCAAGACCATTACCCTGGAGGTCGAGGCATCCGAC 95621 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| ||||| || || || || || || || |||||| Sbjct 95620 ACGATCGAGAACGTTAAGGCGAAGATCCAGGATAAGGAGGGCATTCCGCCAGATCAGCAA 95561 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| || || Sbjct 95560 CGTTTAATCTTTGCTGG 95544 >seq139 Length=456087 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 || || || || || || || || ||||||||||| ||||| || || ||||||||| Sbjct 410276 TTTGTCAAGACGCTTACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTCCGACACCATC 410217 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || ||||| ||| |||||||||||||| || || ||||| || ||||||||||| || Sbjct 410216 GAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAACGTCTC 410157 Query 178050 ATCTTCGCCGG 178060 ||||| ||||| Sbjct 410156 ATCTTTGCCGG 410146 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 ||| | | || ||||| || || || | | || || |||||||| || ||||| || Sbjct 401757 AAACGATGCAGATTTTTGTCAAGACGATTAGTGGCAAGACGATCACTCTTGAGGTCGAGC 401698 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 || |||||||||||||||||||| ||||||||||||||||| || ||||| || Sbjct 401697 CTTCCGACACCATCGAGAACGTCAAGACGAAGATTCAGGACAAAGAGGGTATCCCACCCA 401638 Query 178036 ACCAGCAACGACTTATCTTCGCCGG 178060 |||| || || |||| ||| || Sbjct 401637 TTGAGCAGCGTCTCATCTACGCAGG 401613 >seq350 Length=232170 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||| | ||||| || || || || || || || ||||| || || || || Sbjct 123667 CAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCTTCGGAT 123608 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||||||| || ||||| ||||| |||||||| Sbjct 123607 ACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCAGCAG 123548 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 123547 CGTCTGATCTTCGCCGG 123531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203530888595672