Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq293 129 5e-25 >seq293 Length=269193 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || ||| ||||||||| ||||||||||| || Sbjct 93952 GCCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 94011 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || || || ||||| || || || || ||||| || || | || Sbjct 94012 CAGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGG 94071 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||| | | ||| | || || |||| | | ||| ||| || ||||| Sbjct 94072 TATACCCTCCTTAT-CTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCA 94130 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || ||||||||||| |||||||| |||||| Sbjct 94131 CCTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCATG 94180 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || | || ||||| ||||||| ||| || ||||||||||||||||||||| Sbjct 96069 CCGCCACGCAATCGCAACACGAGATGCAACGTTGATTCTTTCTGAATGTTATAGTCGGAG 96128 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGC-GAATATC 41734 || ||||| | || |||||||| ||||| || |||||| Sbjct 96129 AGTGTGCGTCCATCCTCGAGCTGTTTGCCTGCAAAATATC 96168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462228944945600