Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2089 98.7 1e-15 seq381 98.7 1e-15 seq2012 96.9 4e-15 seq2221 95.1 1e-14 seq1888 95.1 1e-14 seq1299 95.1 1e-14 >seq2089 Length=376597 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||| ||||| | || || || |||| || |||||||| || || || Sbjct 255416 TCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 255475 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || ||||||||||| || | || | || ||||||| | ||| | |||| ||||| | Sbjct 255476 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTTGCTTTGACATT 255534 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || | ||||| |||| || |||||||| ||||| | |||||||| Sbjct 255535 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 255594 Query 43172 AAAGATTTGCATT 43184 ||| || |||||| Sbjct 255595 AAAAATCTGCATT 255607 >seq381 Length=73677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 36099 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 36040 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 36039 TACTACCGAGGATT 36026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 35638 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 35579 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 35578 TACTACCGAGGA 35567 >seq2012 Length=93476 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||||| | ||||||||||| |||||||||||| Sbjct 90254 TCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACT 90313 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 90314 ATACTACCGAGGA 90326 >seq2221 Length=5235760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4566790 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 4566731 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 4566730 TACTACCGAGGA 4566719 >seq1888 Length=201893 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 126300 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 126241 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 126240 TACTACCGAGGA 126229 >seq1299 Length=73203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| |||| ||| |||||| |||||||| ||||| | | || || |||| || Sbjct 16531 ACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTCC 16472 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||| || || || || ||||||||||| || | || | || ||||||| | || Sbjct 16471 AATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGT-CTTG 16413 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||||| ||||| | | | || || | ||||| |||| || |||||||| Sbjct 16412 AATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 16353 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||| | ||||||||||| || |||||| Sbjct 16352 ACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571747330764680