Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2089 82.4 6e-11 seq1299 82.4 6e-11 >seq2089 Length=376597 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 || ||||| ||||| ||||| ||||| || || | |||||||||||| |||||| | Sbjct 256457 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 256516 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 ||||| | | | | |||| | ||||| |||| || || || || || || ||| Sbjct 256517 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 256576 Query 45317 GTCTTCACAAAGATTTGCAT 45336 || || |||||||||||||| Sbjct 256577 GTTTTAACAAAGATTTGCAT 256596 >seq1299 Length=73203 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 || ||||| ||||| ||||||||| | || || | |||||||||||| |||||| | Sbjct 15452 CCCGCGAAAATCAATCGCTGTTGGCCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 15393 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 ||||| | | ||| | || |||||| |||| || || || || || || ||| Sbjct 15392 TTAACATTCTCGACGGTATCAGATGTCTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 15333 Query 45317 GTCTTCACAAAGATTTGCAT 45336 || || |||||||||||||| Sbjct 15332 GTTTTAACAAAGATTTGCAT 15313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395027863941451