Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1299 114 1e-20 seq2089 109 4e-19 >seq1299 Length=73203 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 ||||| || || || | || |||| ||| |||||||| || || ||||| || || || Sbjct 16552 TATCCACCACGAAGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCT 16493 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | | ||| || || |||||||| ||||||||| |||| |||| || ||||| Sbjct 16492 GATAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGT 16433 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||||||||| || ||||| |||||| ||| | | | | ||| ||| | ||| Sbjct 16432 GGAATGCCTTCCTTGTCTTGAATTT-TTGCTTTGACGTTTTCGATAGTATCAGAAGCCTC 16374 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| |||| || ||||| || ||||||||||| |||||| Sbjct 16373 CACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 >seq2089 Length=376597 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 ||||| || || || | ||| |||| ||| || || ||||| || ||||| || || ||| Sbjct 255377 TATCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCG 255436 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | || ||| || || |||| || ||||||||| |||| |||| || ||||| Sbjct 255437 GACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGT 255496 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||||||||| || ||| | |||||| ||| | | | | ||| ||| | ||| Sbjct 255497 GGAATGCCTTCCTTGTCTTGAATCT-TTGCTTTGACATTTTCGATAGTATCAGAAGCCTC 255555 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| |||| || ||||| || ||||||||||| |||||| Sbjct 255556 CACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379298548780095