Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2089 127 2e-24 seq1299 111 1e-19 >seq2089 Length=376597 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||||||| |||| || ||||| || || |||| || || | || Sbjct 255606 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 255547 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||||| |||||| || ||| | | ||||||||||| | || || || || Sbjct 255546 GATACTATCGAAAATGTCAAAGCAAAGATTCAAG-ACAAGGAAGGCATTCCACCAGATCA 255488 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| |||| ||| | || || ||||||||| Sbjct 255487 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAA 255428 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || |||||||| || || ||||| ||| Sbjct 255427 TATTCAGAAGGAATCGACGCTGCACCTGGTTCTT 255394 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 |||||||||||| ||||| || || ||||| || ||||||||||| | || || || | Sbjct 256922 AAACATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGC 256863 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| || ||| | |||| |||||||| || | ||||| || Sbjct 256862 TTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATTCCGCCAGA 256803 Query 31309 CCAGCAGCGTCTAATATTCGCTGG 31332 ||||||||| || ||||| || || Sbjct 256802 CCAGCAGCGCCTTATATTTGCAGG 256779 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| ||||| || |||| ||||| ||||||||| | || ||||| | || Sbjct 256251 CATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTC 256192 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| || || | || |||||| ||||| | || || || || Sbjct 256191 TGACACAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCTCCAGATCA 256132 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTT 31341 |||||| || || || ||||| || || || Sbjct 256131 GCAGCGCCTTATTTTTGCTGGTAAGCATTT 256102 >seq1299 Length=73203 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||||||| |||| || ||||| || || |||| || || | || Sbjct 16323 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 16382 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| |||||| | ||| |||||||||||| | || || || ||| Sbjct 16383 GATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAG 16442 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| || || || || ||||| || ||||| ||| | || || | | |||||||| Sbjct 16443 CAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTAC-ATTATCAGATTATAA 16501 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || ||||| || Sbjct 16502 TATTCAGAAGGAGTCAACACTGCACCTGGTTCT 16534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445711620881520