Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2089 143 6e-29 seq1299 136 9e-27 seq2629 113 1e-19 seq2168 111 4e-19 >seq2089 Length=376597 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| |||||||||||||| || || | || | |||||| Sbjct 255394 AAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTC 255453 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| ||||| || || || ||||| || || Sbjct 255454 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 255513 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||||||| |||||||| | ||||| || || || || ||||| || || Sbjct 255514 TTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGT 255573 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || |||||||| ||||||||| Sbjct 255574 TTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| || | ||| ||||| ||||| || |||||||| ||||||||| Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||| | || || || || || |||| || || ||||| || Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | |||||||||||| || ||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCAT 256250 >seq1299 Length=73203 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || |||||||||||||| || |||| || | |||||| Sbjct 16534 AGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCC 16475 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || || ||||| || || | ||| ||||| || || || ||||| || || Sbjct 16474 TCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCT 16415 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| |||||||| || ||||| | ||||| || || || || ||||| || || Sbjct 16414 TGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTT 16355 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || |||||||| ||||||||| Sbjct 16354 TTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | ||||||||| ||||| || ||||| |||||||||| ||| Sbjct 15814 TTGCCAGCAAAAATAAGACGCTGTTGATCCGGAGGGATCCCTTCCTTATCCTGAACCTTG 15755 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || ||||||||||| | || || || || || |||| || || ||| | | || Sbjct 15754 GCCTTTACATTTTCGATTGTGTCAGAAGTCTCAACTTCTAAGGTGATCGTCATGCTCGTC 15695 Query 104537 AGTGTTTTTACAAATATCTGCA 104558 | |||||||||||| || |||| Sbjct 15694 AATGTTTTTACAAAAATTTGCA 15673 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||| || || | ||| || ||||| || || || || |||||| Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCT 15074 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || || || || || || || || || ||||| ||| Sbjct 15073 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 15014 Query 104540 GTTTTTACAAATATCTGCATTTT 104562 ||||||||||| || ||||| || Sbjct 15013 GTTTTTACAAAGATTTGCATGTT 14991 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || ||||| | | |||||| | || || ||||| || || ||||| || ||||| Sbjct 15452 CCCGCGAAAATCAATCGCTGTTGGCCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 15393 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || |||||||| | || || || | ||| || || ||||||||||| Sbjct 15392 TTAACATTCTCGACGGTATCAGATGTCTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 15333 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| Sbjct 15332 GTTTTAACAAAGATTTGCAT 15313 >seq2629 Length=74368 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | || ||| ||||| |||||||| |||||||| ||||| || || ||| Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 48039 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | ||||| | ||| ||||| || ||||| || |||||||| | Sbjct 48038 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 47979 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| Sbjct 47978 GTTTTGACAAAAATTTGCAT 47959 >seq2168 Length=114285 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||||||||||| || || || || ||||| ||||| || || Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 62483 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||||||| | ||||||||| || ||||| ||||| ||||| | Sbjct 62482 TTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 62423 Query 104540 GTTTTTACAAATATCTGCATTTTG 104563 || || || ||||||||||| ||| Sbjct 62422 GTCTTCACGAATATCTGCATCTTG 62399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151253370217348