Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2089 105 6e-18 seq1299 96.9 3e-15 >seq2089 Length=376597 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| || ||||| | |||| || |||||||||||||||| || | | Sbjct 255416 TCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 255475 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGA 48654 || | ||||||||||| || | | ||||||||| ||| || ||| |||| | Sbjct 255476 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTT-TGCTTTGACATT 255534 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||| | || |||| |||| ||||||||||||||| || | ||| || || Sbjct 255535 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 255594 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 255595 AAAAATCTGCAT 255606 >seq1299 Length=73203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| |||||| ||||| || ||||| | ||| || ||||||||| ||| Sbjct 16525 TGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTCCAATTGC 16466 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | ||||||||||| || | | ||||||||| |||||| Sbjct 16465 TTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATTTT- 16407 Query 48644 TGCTTGATAGACGCT----ATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 ||||| |||| | || ||||| | || |||| |||| ||||||||||||||| Sbjct 16406 TGCTTT---GACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACC 16350 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || |||||||||||||| Sbjct 16349 CGTCAAAGTCTTTACAAAAATCTGCAT 16323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421200727655831