Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2089 116 3e-21 seq1299 114 1e-20 >seq2089 Length=376597 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || |||||||| || | ||||||||| || ||| |||||| Sbjct 255398 ACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCC 255457 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | || ||||||||||| ||||| ||||| ||||| | | Sbjct 255458 AGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGA 255517 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||| ||||| ||| ||| |||| || || || | || |||||||| Sbjct 255518 ATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTA 255577 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || ||||| |||||||| Sbjct 255578 CCCGTCAAAGTCTTTACAAAAATCTGCAT 255606 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||| ||||| ||||| ||||| || || ||||| | ||||||||||| || Sbjct 256463 AAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCCTTAACA 256522 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||||| || || || | ||||| ||||| || ||||||||||| Sbjct 256523 TTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGAGTTTTA 256582 Query 94994 ACAAAGATCTGCAT 95007 |||||||| ||||| Sbjct 256583 ACAAAGATTTGCAT 256596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||| |||||||| || ||||| | |||||||| || || | | ||| Sbjct 256797 TGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 256856 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || |||| ||||| ||||||||||| || |||||||| ||||| ||| Sbjct 256857 TCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGTGTTTTCACGAAGATTTGC 256916 Query 95006 ATGCTTACAA 95015 ||| |||||| Sbjct 256917 ATGTTTACAA 256926 >seq1299 Length=73203 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||| ||||| || || ||||| || | |||||||| | ||| ||| || |||| Sbjct 16531 ACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATC--TGATAATGTACGACCGTCCT 16474 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || || || ||||||| | || ||||||||||| ||||| ||||| ||||| | Sbjct 16473 CCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTT 16414 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||||||| |||||| ||| ||| |||| || || || | || ||||||| Sbjct 16413 GAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTT 16354 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||| || ||||| |||||||| Sbjct 16353 TACCCGTCAAAGTCTTTACAAAAATCTGCAT 16323 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| |||| ||| |||||||| ||||| | |||||||| || || | | ||| Sbjct 15115 TGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 15056 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || |||| ||||| ||||||||||| || ||||| |||||||| ||| Sbjct 15055 TCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGTGTTTTTACAAAGATTTGC 14996 Query 95006 ATGCTTACAA 95015 ||| |||||| Sbjct 14995 ATGTTTACAA 14986 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 |||| ||| || |||| || || |||| ||||| || || ||||| | ||||||||| Sbjct 15451 CCGCGAAA-ATCAATCGCTGTTGGCCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 15393 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || |||| || |||| || || || | ||||| ||||| ||||||||| Sbjct 15392 TTAACATTCTCGACGGTATCAGATGTCTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 15333 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| |||||||| ||||| Sbjct 15332 GTTTTAACAAAGATTTGCAT 15313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448236110615160