Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1961 167 4e-37 seq1386 167 4e-37 seq104 167 4e-37 seq103 167 4e-37 seq1932 93.3 7e-15 >seq1961 Length=109596 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || || || |||||||| || ||||||||||| Sbjct 76495 GCGAAGCGTCATCGTAAAGTGCTGCGTGACAATATTCAAGGAATAACAAAGCCAGCTATT 76436 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || || ||| | || |||||| | |||||||||| Sbjct 76435 CGACGTTTGGCACGACGTGGTGGTGTGAAACGTATTTCGGGATTGATTTATGAAGAGACA 76376 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || | ||| || || | ||| ||| | ||| ||| Sbjct 76375 CGTGGCGTATTGAAAGTGTTTTTGGAGAATGTCATACGTGACGCTGTAACATATTGTGAG 76316 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || || | |||||| | |||||||| |||||||| ||||| Sbjct 76315 CACGCGAAACGAAAGACAGTTACAGCAATGGATGTTGTCTATGCGTTGAAACGCCAAGGA 76256 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||| ||||| Sbjct 76255 CGTACATTGTATGGTTTTGGTGGTTAA 76229 >seq1386 Length=5603 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || || || |||||||| || ||||||||||| Sbjct 2159 GCGAAGCGTCATCGTAAAGTGCTGCGTGACAATATTCAAGGAATAACAAAGCCAGCTATT 2100 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || || ||| | || |||||| | |||||||||| Sbjct 2099 CGACGTTTGGCACGACGTGGTGGTGTGAAACGTATTTCGGGATTGATTTATGAAGAGACA 2040 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || | ||| || || | ||| ||| | ||| ||| Sbjct 2039 CGTGGCGTATTGAAAGTGTTTTTGGAGAATGTCATACGTGACGCTGTAACATATTGTGAG 1980 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || || | |||||| | |||||||| |||||||| ||||| Sbjct 1979 CACGCGAAACGAAAGACAGTTACAGCAATGGATGTTGTCTATGCGTTGAAACGCCAAGGA 1920 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||| ||||| Sbjct 1919 CGTACATTGTATGGTTTTGGTGGTTAA 1893 >seq104 Length=5459 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || || || |||||||| || ||||||||||| Sbjct 3300 GCGAAGCGTCATCGTAAAGTGCTGCGTGACAATATTCAAGGAATAACAAAGCCAGCTATT 3359 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || || ||| | || |||||| | |||||||||| Sbjct 3360 CGACGTTTGGCACGACGTGGTGGTGTGAAACGTATTTCGGGATTGATTTATGAAGAGACA 3419 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || | ||| || || | ||| ||| | ||| ||| Sbjct 3420 CGTGGCGTATTGAAAGTGTTTTTGGAGAATGTCATACGTGACGCTGTAACATATTGTGAG 3479 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || || | |||||| | |||||||| |||||||| ||||| Sbjct 3480 CACGCGAAACGAAAGACAGTTACAGCAATGGATGTTGTCTATGCGTTGAAACGCCAAGGA 3539 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||| ||||| Sbjct 3540 CGTACATTGTATGGTTTTGGTGGTTAA 3566 >seq103 Length=7007 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || || || |||||||| || ||||||||||| Sbjct 2161 GCGAAGCGTCATCGTAAAGTGCTGCGTGACAATATTCAAGGAATAACAAAGCCAGCTATT 2102 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || || ||| | || |||||| | |||||||||| Sbjct 2101 CGACGTTTGGCACGACGTGGTGGTGTGAAACGTATTTCGGGATTGATTTATGAAGAGACA 2042 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || | ||| || || | ||| ||| | ||| ||| Sbjct 2041 CGTGGCGTATTGAAAGTGTTTTTGGAGAATGTCATACGTGACGCTGTAACATATTGTGAG 1982 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || || | |||||| | |||||||| |||||||| ||||| Sbjct 1981 CACGCGAAACGAAAGACAGTTACAGCAATGGATGTTGTCTATGCGTTGAAACGCCAAGGA 1922 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||| ||||| Sbjct 1921 CGTACATTGTATGGTTTTGGTGGTTAA 1895 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || || || |||||||| || ||||||||||| Sbjct 6339 GCGAAGCGTCATCGTAAAGTGCTGCGTGACAATATTCAAGGAATAACAAAGCCAGCTATT 6280 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || || ||| | || |||||| | |||||||||| Sbjct 6279 CGACGTTTGGCACGACGTGGTGGTGTGAAACGTATTTCGGGATTGATTTATGAAGAGACA 6220 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || | ||| || || | ||| ||| | ||| ||| Sbjct 6219 CGTGGCGTATTGAAAGTGTTTTTGGAGAATGTCATACGTGACGCTGTAACATATTGTGAG 6160 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || || | |||||| | |||||||| |||||||| ||||| Sbjct 6159 CACGCGAAACGAAAGACAGTTACAGCAATGGATGTTGTCTATGCGTTGAAACGCCAAGGA 6100 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||| ||||| Sbjct 6099 CGTACATTGTATGGTTTTGGTGGTTAA 6073 >seq1932 Length=1471610 Score = 93.3 bits (102), Expect = 7e-15 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | ||| || |||||||| ||||| || || ||||||||||| Sbjct 935842 CGCTAAGCGCCATCGAAAGGTTCTACGTGATAACATTCAAGGTATAACGAAGCCAGCTAT 935901 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| ||||||||||| || || || | || || | | |||||||| | Sbjct 935902 TCGTCGTTTGGCACGTCGTGGTGGCGTGAAACGAATTTCAGGTCTCATTTATGAAGAAAC 935961 Query 16552 TCGTGATGTTTTGAAG 16567 ||| || |||||| Sbjct 935962 GCGTAGCGTGTTGAAG 935977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066211447883