Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2089 116 3e-21 seq1299 102 8e-17 seq2629 84.2 2e-11 >seq2089 Length=376597 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||| ||||| ||||| || |||||| || ||||| |||||| ||||||||||| Sbjct 255410 GTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCC 255469 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TT 131156 || |||| | |||||||| || || || || ||||| ||||| ||| | | ||| || Sbjct 255470 GCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC-TTGAATCTTTGCTTT 255528 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | |||||| | | ||| | |||| || | ||||||||| || | ||| Sbjct 255529 GACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGT 255588 Query 131217 TTTTACGAAAATCTGCAT 131234 ||||| ||||||||||| Sbjct 255589 CTTTACAAAAATCTGCAT 255606 >seq1299 Length=73203 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 || |||||||| ||||| || ||||| | | ||| | || |||||| | |||||||| Sbjct 16519 GTTGACTCCTTCTGAATATTATAATCTGATAATG-TACGACCGTCCTCCAATTGCTTGCC 16461 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | |||||||| || || || || ||||| ||||| ||| ||| ||||| Sbjct 16460 CGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCT-TGAATTTTTGCTT 16402 Query 131157 -GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAG 131215 || | || | |||||| | | ||| | |||| || | ||||||||| || | || Sbjct 16401 TGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAG 16342 Query 131216 TTTTTACGAAAATCTGCAT 131234 | ||||| ||||||||||| Sbjct 16341 TCTTTACAAAAATCTGCAT 16323 >seq2629 Length=74368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 131095 CCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 ||||| | || || |||||||| || ||||| || ||||||||||| |||||| Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 48039 Query 131155 TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGA 131214 || | | ||| | ||||| | ||| |||| || | |||| |||||||| |||| | Sbjct 48038 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 47979 Query 131215 GTTTTTACGAAAATCTGCATG 131235 ||||| || ||||| |||||| Sbjct 47978 GTTTTGACAAAAATTTGCATG 47958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471954795527040